Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LINC00556-201ENST00000569603 412 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 BNIP3P40-201ENST00000596017 556 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AP001267.4-201ENST00000602598 545 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AC009269.6-201ENST00000621778 588 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AC020763.5-201ENST00000623298 430 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 OFD1P17-201ENST00000437639 3018 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 AL354854.1-201ENST00000455940 1363 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 AC005224.3-201ENST00000584683 2140 ntBASIC5.24□□□□□ -1.57
LMX1BO60663 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
LMX1BO60663 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LMX1BO60663 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.24□□□□□ -1.57
LMX1BO60663 AC022325.1-201ENST00000502748 2199 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 OR51C1P-202ENST00000641159 1444 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 AC087516.1-201ENST00000561236 2428 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 SNORD1C-201ENST00000363315 78 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.23□□□□□ -1.57
LMX1BO60663 MIR130B-202ENST00000385018 82 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AL607077.1-201ENST00000401718 499 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 OR1F12-201ENST00000402365 945 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AL096829.1-201ENST00000413677 457 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 Z68694.1-201ENST00000413929 841 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 CDY17P-201ENST00000414121 1282 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.23□□□□□ -1.57
LMX1BO60663 MTND4P11-201ENST00000417020 1058 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 RPS15AP30-201ENST00000420976 390 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AL354692.1-201ENST00000423044 315 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 RPL12P12-201ENST00000424633 501 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AC021876.1-201ENST00000425959 359 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 FAR1P1-201ENST00000427163 934 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AL590623.1-201ENST00000427864 105 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 CDY8P-201ENST00000428380 1279 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AL158053.1-201ENST00000441503 453 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 CUBNP2-201ENST00000443534 1139 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 ZNF619P1-201ENST00000446539 752 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 CDY20P-201ENST00000447528 1279 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 EIF2S2P5-201ENST00000457635 968 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AC007998.1-201ENST00000474156 672 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.23□□□□□ -1.57
LMX1BO60663 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 AC010374.2-201ENST00000512933 535 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 SNORD46.2-201ENST00000516021 102 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 RN7SKP238-201ENST00000516483 249 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.23□□□□□ -1.57
LMX1BO60663 HNRNPRP2-201ENST00000528421 743 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 AP003049.1-201ENST00000529418 457 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.23□□□□□ -1.57
LMX1BO60663 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.23□□□□□ -1.57
LMX1BO60663 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.23□□□□□ -1.57
LMX1BO60663 NPM1P45-201ENST00000583151 559 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 BNIP3P27-201ENST00000599991 412 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
LMX1BO60663 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.23□□□□□ -1.57
LMX1BO60663 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
LMX1BO60663 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
LMX1BO60663 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.23□□□□□ -1.57
LMX1BO60663 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LMX1BO60663 RARSP1-201ENST00000542842 1418 ntBASIC5.23□□□□□ -1.57
LMX1BO60663 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
LMX1BO60663 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LMX1BO60663 CCAT2-201ENST00000630920 1752 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms