Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
USHBP1Q8N6Y0 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC26.01■■□□□ 1.76
USHBP1Q8N6Y0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC26.01■■□□□ 1.75
USHBP1Q8N6Y0 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 TMEM179-206ENST00000616017 1645 ntBASIC26■■□□□ 1.75
USHBP1Q8N6Y0 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 LIN28AP1-201ENST00000429574 405 ntBASIC26■■□□□ 1.75
USHBP1Q8N6Y0 ATP5G1P1-201ENST00000448724 379 ntBASIC26■■□□□ 1.75
USHBP1Q8N6Y0 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC26■■□□□ 1.75
USHBP1Q8N6Y0 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 AP000692.2-201ENST00000608391 879 ntBASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 BX119927.1-201ENST00000636596 1552 ntBASIC25.99■■□□□ 1.75
USHBP1Q8N6Y0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 LGALS8-AS1-201ENST00000487567 1457 ntBASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
USHBP1Q8N6Y0 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 AC007375.3-201ENST00000600936 2314 ntBASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 HIST1H2APS4-201ENST00000362070 348 ntBASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 AC087388.1-201ENST00000571370 1112 ntBASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC25.97■■□□□ 1.75
USHBP1Q8N6Y0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 LINC01465-201ENST00000408887 1940 ntBASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 GUK1-204ENST00000366721 689 ntTSL 3 BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
USHBP1Q8N6Y0 AC004951.3-201ENST00000418645 1148 ntBASIC25.96■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms