Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 AL137060.1-201ENST00000618151 2648 ntBASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 AC113347.1-201ENST00000413321 391 ntBASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HDDC3Q8N4P3 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 MIR1238-201ENST00000408483 83 ntBASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 AL137013.1-201ENST00000432946 1228 ntBASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 TUBB8P6-201ENST00000436895 1288 ntBASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 KRT18P16-201ENST00000510337 1294 ntBASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 AP000525.1-201ENST00000608286 694 ntBASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.75■□□□□ 0.75
HDDC3Q8N4P3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 KRT18P57-201ENST00000443599 1254 ntBASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 NAPSB-206ENST00000562112 1266 ntBASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 AC020907.5-201ENST00000624372 1936 ntBASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 BX119927.1-201ENST00000636596 1552 ntBASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 KRT18P22-201ENST00000402024 1347 ntBASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.74■□□□□ 0.75
HDDC3Q8N4P3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 AC079598.2-202ENST00000546624 1451 ntBASIC19.73■□□□□ 0.75
HDDC3Q8N4P3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 AC116562.2-201ENST00000507042 360 ntBASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.72■□□□□ 0.75
HDDC3Q8N4P3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms