Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 SPDYE15P-201ENST00000424157 909 ntBASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 AC121338.2-201ENST00000622535 1744 ntBASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 AC026310.3-201ENST00000625186 2373 ntBASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 LIN28AP1-201ENST00000429574 405 ntBASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 AL441883.1-201ENST00000566170 1045 ntBASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC13.3□□□□□ -0.28
VPS13DQ5THJ4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 AC091076.1-201ENST00000610741 619 ntBASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
VPS13DQ5THJ4 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 BID-203ENST00000399765 1879 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 FP700111.2-201ENST00000619190 1892 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 AC093458.2-201ENST00000623150 629 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 AL117328.2-201ENST00000624617 1940 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 CLEC4GP1-201ENST00000596555 870 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 AC011298.2-201ENST00000617989 482 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 AC007225.1-201ENST00000566331 1836 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 AC133561.1-201ENST00000568600 2415 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 FXN-203ENST00000396366 922 ntTSL 2 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 MIR3180-1-201ENST00000580374 94 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 MIR3180-3-201ENST00000584616 94 ntBASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
VPS13DQ5THJ4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 GXYLT1P6-201ENST00000456472 1187 ntBASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.27□□□□□ -0.28
VPS13DQ5THJ4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
VPS13DQ5THJ4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms