Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
RFC4P35249 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
RFC4P35249 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
RFC4P35249 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC24.82■■□□□ 1.56
RFC4P35249 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
RFC4P35249 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC24.82■■□□□ 1.56
RFC4P35249 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC24.82■■□□□ 1.56
RFC4P35249 HOMER2P1-201ENST00000455653 964 ntBASIC24.82■■□□□ 1.56
RFC4P35249 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC24.82■■□□□ 1.56
RFC4P35249 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC24.82■■□□□ 1.56
RFC4P35249 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC24.82■■□□□ 1.56
RFC4P35249 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.82■■□□□ 1.56
RFC4P35249 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC24.82■■□□□ 1.56
RFC4P35249 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC24.82■■□□□ 1.56
RFC4P35249 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RFC4P35249 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RFC4P35249 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC24.81■■□□□ 1.56
RFC4P35249 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
RFC4P35249 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC24.81■■□□□ 1.56
RFC4P35249 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RFC4P35249 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC24.81■■□□□ 1.56
RFC4P35249 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
RFC4P35249 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.81■■□□□ 1.56
RFC4P35249 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.81■■□□□ 1.56
RFC4P35249 GXYLT1P6-201ENST00000456472 1187 ntBASIC24.81■■□□□ 1.56
RFC4P35249 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.81■■□□□ 1.56
RFC4P35249 AL512604.3-201ENST00000569583 964 ntBASIC24.81■■□□□ 1.56
RFC4P35249 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC24.81■■□□□ 1.56
RFC4P35249 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
RFC4P35249 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC24.81■■□□□ 1.56
RFC4P35249 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RFC4P35249 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
RFC4P35249 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.8■■□□□ 1.56
RFC4P35249 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.8■■□□□ 1.56
RFC4P35249 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
RFC4P35249 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.8■■□□□ 1.56
RFC4P35249 AL353719.1-201ENST00000566847 864 ntBASIC24.8■■□□□ 1.56
RFC4P35249 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC24.8■■□□□ 1.56
RFC4P35249 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC24.8■■□□□ 1.56
RFC4P35249 AC140113.3-201ENST00000605663 199 ntBASIC24.8■■□□□ 1.56
RFC4P35249 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC24.8■■□□□ 1.56
RFC4P35249 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC24.8■■□□□ 1.56
RFC4P35249 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
RFC4P35249 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RFC4P35249 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC24.79■■□□□ 1.56
RFC4P35249 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC24.79■■□□□ 1.56
RFC4P35249 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 DERL1-203ENST00000419562 918 ntTSL 2 BASIC24.79■■□□□ 1.56
RFC4P35249 DUSP5P1-201ENST00000441325 1139 ntBASIC24.79■■□□□ 1.56
RFC4P35249 AL359075.1-203ENST00000462729 1002 ntBASIC24.79■■□□□ 1.56
RFC4P35249 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC24.79■■□□□ 1.56
RFC4P35249 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC24.79■■□□□ 1.56
RFC4P35249 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC24.79■■□□□ 1.56
RFC4P35249 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
RFC4P35249 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC24.79■■□□□ 1.56
RFC4P35249 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC24.78■■□□□ 1.56
RFC4P35249 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC24.78■■□□□ 1.56
RFC4P35249 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 AL671277.2-201ENST00000458060 996 ntBASIC24.78■■□□□ 1.56
RFC4P35249 Z85996.1-201ENST00000494644 937 ntBASIC24.78■■□□□ 1.56
RFC4P35249 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
RFC4P35249 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC24.78■■□□□ 1.56
RFC4P35249 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC24.78■■□□□ 1.56
RFC4P35249 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.78■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms