Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
COL5A3P25940 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
COL5A3P25940 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.97■■□□□ 1.59
COL5A3P25940 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.97■■□□□ 1.59
COL5A3P25940 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
COL5A3P25940 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC24.96■■□□□ 1.59
COL5A3P25940 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
COL5A3P25940 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC24.96■■□□□ 1.59
COL5A3P25940 TSPY5P-201ENST00000426936 936 ntBASIC24.96■■□□□ 1.59
COL5A3P25940 TSPY17P-201ENST00000450329 467 ntBASIC24.96■■□□□ 1.59
COL5A3P25940 KRT18P56-201ENST00000507275 550 ntBASIC24.96■■□□□ 1.59
COL5A3P25940 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
COL5A3P25940 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC24.96■■□□□ 1.59
COL5A3P25940 AC069148.1-201ENST00000608741 768 ntBASIC24.96■■□□□ 1.59
COL5A3P25940 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.96■■□□□ 1.59
COL5A3P25940 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
COL5A3P25940 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC24.96■■□□□ 1.59
COL5A3P25940 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
COL5A3P25940 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
COL5A3P25940 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC24.96■■□□□ 1.59
COL5A3P25940 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC24.96■■□□□ 1.59
COL5A3P25940 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
COL5A3P25940 PCED1CP-201ENST00000419887 785 ntBASIC24.95■■□□□ 1.59
COL5A3P25940 CA15P1-201ENST00000481698 905 ntBASIC24.95■■□□□ 1.59
COL5A3P25940 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC24.95■■□□□ 1.59
COL5A3P25940 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC24.95■■□□□ 1.59
COL5A3P25940 AC092720.2-201ENST00000602388 1665 ntBASIC24.95■■□□□ 1.59
COL5A3P25940 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
COL5A3P25940 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
COL5A3P25940 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
COL5A3P25940 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
COL5A3P25940 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
COL5A3P25940 KRT18P48-201ENST00000434763 852 ntBASIC24.95■■□□□ 1.58
COL5A3P25940 AL441883.1-201ENST00000566170 1045 ntBASIC24.95■■□□□ 1.58
COL5A3P25940 WWC2-AS2-201ENST00000578387 2183 ntBASIC24.94■■□□□ 1.58
COL5A3P25940 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL5A3P25940 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL5A3P25940 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL5A3P25940 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL5A3P25940 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL5A3P25940 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL5A3P25940 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC24.94■■□□□ 1.58
COL5A3P25940 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC24.94■■□□□ 1.58
COL5A3P25940 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.94■■□□□ 1.58
COL5A3P25940 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL5A3P25940 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC24.94■■□□□ 1.58
COL5A3P25940 AC092647.4-201ENST00000457211 535 ntBASIC24.94■■□□□ 1.58
COL5A3P25940 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC24.94■■□□□ 1.58
COL5A3P25940 AP003041.3-201ENST00000527151 707 ntBASIC24.94■■□□□ 1.58
COL5A3P25940 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC24.94■■□□□ 1.58
COL5A3P25940 AC130371.2-201ENST00000619443 611 ntBASIC24.94■■□□□ 1.58
COL5A3P25940 AL023973.1-201ENST00000624619 620 ntBASIC24.94■■□□□ 1.58
COL5A3P25940 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL5A3P25940 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.93■■□□□ 1.58
COL5A3P25940 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL5A3P25940 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
COL5A3P25940 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL5A3P25940 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC24.93■■□□□ 1.58
COL5A3P25940 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC24.93■■□□□ 1.58
COL5A3P25940 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL5A3P25940 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
COL5A3P25940 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL5A3P25940 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL5A3P25940 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC24.93■■□□□ 1.58
COL5A3P25940 AC012676.1-201ENST00000574705 1949 ntBASIC24.93■■□□□ 1.58
COL5A3P25940 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL5A3P25940 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL5A3P25940 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL5A3P25940 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL5A3P25940 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC24.92■■□□□ 1.58
COL5A3P25940 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC24.92■■□□□ 1.58
COL5A3P25940 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC24.92■■□□□ 1.58
COL5A3P25940 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC24.92■■□□□ 1.58
COL5A3P25940 KRT18P38-201ENST00000449496 1282 ntBASIC24.92■■□□□ 1.58
COL5A3P25940 AL671277.2-201ENST00000458060 996 ntBASIC24.92■■□□□ 1.58
COL5A3P25940 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC24.92■■□□□ 1.58
COL5A3P25940 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC24.92■■□□□ 1.58
COL5A3P25940 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC24.92■■□□□ 1.58
COL5A3P25940 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC24.92■■□□□ 1.58
COL5A3P25940 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL5A3P25940 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL5A3P25940 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC24.92■■□□□ 1.58
COL5A3P25940 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL5A3P25940 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC24.92■■□□□ 1.58
COL5A3P25940 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC24.92■■□□□ 1.58
COL5A3P25940 CD81-212ENST00000526072 1172 ntTSL 5 BASIC24.92■■□□□ 1.58
COL5A3P25940 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC24.92■■□□□ 1.58
COL5A3P25940 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
COL5A3P25940 EP400NL-214ENST00000641289 2402 ntBASIC24.91■■□□□ 1.58
COL5A3P25940 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL5A3P25940 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL5A3P25940 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
COL5A3P25940 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL5A3P25940 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL5A3P25940 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC24.91■■□□□ 1.58
COL5A3P25940 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.91■■□□□ 1.58
COL5A3P25940 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC24.91■■□□□ 1.58
COL5A3P25940 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC24.91■■□□□ 1.58
COL5A3P25940 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL5A3P25940 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms