Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC7.23□□□□□ -1.25
LIG3P49916 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
LIG3P49916 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
LIG3P49916 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
LIG3P49916 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 AL356479.1-203ENST00000411798 1440 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 PSORS1C1-201ENST00000259881 908 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
LIG3P49916 HYPM-201ENST00000341016 501 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
LIG3P49916 RNA5SP218-201ENST00000363188 109 ntBASIC7.22□□□□□ -1.25
LIG3P49916 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
LIG3P49916 AC024937.2-201ENST00000411669 1242 ntBASIC7.22□□□□□ -1.25
LIG3P49916 LINC01881-201ENST00000416103 412 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC7.22□□□□□ -1.25
LIG3P49916 PPIAP23-201ENST00000420099 497 ntBASIC7.22□□□□□ -1.25
LIG3P49916 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
LIG3P49916 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC7.22□□□□□ -1.25
LIG3P49916 FO393419.3-201ENST00000428741 282 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC7.22□□□□□ -1.25
LIG3P49916 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC7.22□□□□□ -1.25
LIG3P49916 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC7.22□□□□□ -1.25
LIG3P49916 AL035407.2-201ENST00000454090 378 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AL109741.2-201ENST00000455561 343 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 PABPC1P10-201ENST00000464731 381 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AP000805.1-201ENST00000471604 784 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC105391.1-201ENST00000503155 1045 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC138409.2-202ENST00000507274 458 ntBASIC7.22□□□□□ -1.25
LIG3P49916 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC7.22□□□□□ -1.25
LIG3P49916 RPS20-202ENST00000518875 671 ntTSL 2 BASIC7.22□□□□□ -1.25
LIG3P49916 IGHVIII-26-1-201ENST00000520387 250 ntBASIC7.22□□□□□ -1.25
LIG3P49916 HIGD1AP18-201ENST00000520730 278 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC7.22□□□□□ -1.25
LIG3P49916 AP001646.2-201ENST00000528645 1156 ntBASIC7.22□□□□□ -1.25
LIG3P49916 PDCL3P1-201ENST00000534575 734 ntBASIC7.22□□□□□ -1.25
LIG3P49916 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 AC007115.1-201ENST00000546853 234 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC090115.2-201ENST00000548060 883 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 AC090971.3-201ENST00000557871 1041 ntBASIC7.22□□□□□ -1.25
LIG3P49916 TRIM69-204ENST00000558329 1211 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 AC015801.1-201ENST00000585651 153 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 AP000811.1-201ENST00000603803 651 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC024085.1-201ENST00000604299 432 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC010738.1-201ENST00000604970 987 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC012557.1-201ENST00000607115 611 ntBASIC7.22□□□□□ -1.25
LIG3P49916 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 AL121782.1-201ENST00000611242 413 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 AC107075.1-201ENST00000613695 314 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC116165.3-201ENST00000614524 400 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC105227.2-201ENST00000615075 605 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC090246.1-201ENST00000616499 426 ntBASIC7.22□□□□□ -1.25
LIG3P49916 ASB8-218ENST00000629941 278 ntTSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 AC243725.1-201ENST00000637164 436 ntBASIC7.22□□□□□ -1.25
LIG3P49916 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 LINC01808-202ENST00000641680 1116 ntBASIC7.22□□□□□ -1.25
LIG3P49916 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
LIG3P49916 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 AC117409.1-201ENST00000470499 1310 ntBASIC7.22□□□□□ -1.25
LIG3P49916 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
LIG3P49916 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
LIG3P49916 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
LIG3P49916 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
LIG3P49916 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
LIG3P49916 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
LIG3P49916 AC096656.1-201ENST00000623826 1364 ntBASIC7.21□□□□□ -1.25
LIG3P49916 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
LIG3P49916 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.25
LIG3P49916 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
LIG3P49916 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC7.21□□□□□ -1.25
LIG3P49916 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.25
LIG3P49916 VN2R3P-201ENST00000422626 1412 ntBASIC7.21□□□□□ -1.25
LIG3P49916 POMP-202ENST00000460403 1428 ntTSL 3 BASIC7.21□□□□□ -1.25
LIG3P49916 AC061975.5-201ENST00000584928 1441 ntBASIC7.21□□□□□ -1.25
LIG3P49916 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.26
LIG3P49916 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
LIG3P49916 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
LIG3P49916 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
LIG3P49916 RNA5SP442-201ENST00000365050 107 ntBASIC7.21□□□□□ -1.26
LIG3P49916 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
LIG3P49916 CGA-201ENST00000369582 729 ntTSL 5 BASIC7.21□□□□□ -1.26
LIG3P49916 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
LIG3P49916 AL590084.2-201ENST00000401481 382 ntBASIC7.21□□□□□ -1.26
LIG3P49916 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC7.21□□□□□ -1.26
LIG3P49916 AL662791.3-201ENST00000413771 776 ntBASIC7.21□□□□□ -1.26
LIG3P49916 RPA2P2-201ENST00000419698 796 ntBASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms