Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RN7SL547P-201ENST00000490793 290 ntBASIC6.04□□□□□ -1.44
HOXA9P31269 AC006499.3-201ENST00000506077 748 ntBASIC6.04□□□□□ -1.44
HOXA9P31269 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.04□□□□□ -1.44
HOXA9P31269 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.04□□□□□ -1.44
HOXA9P31269 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.04□□□□□ -1.44
HOXA9P31269 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXA9P31269 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 AC096996.1-201ENST00000563813 325 ntBASIC6.04□□□□□ -1.44
HOXA9P31269 MIR1269B-201ENST00000580405 75 ntBASIC6.04□□□□□ -1.44
HOXA9P31269 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.04□□□□□ -1.44
HOXA9P31269 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXA9P31269 AC010245.2-201ENST00000606908 1167 ntBASIC6.04□□□□□ -1.44
HOXA9P31269 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 AC016769.4-201ENST00000616893 535 ntBASIC6.04□□□□□ -1.44
HOXA9P31269 SAMMSON-227ENST00000642114 1199 ntBASIC6.04□□□□□ -1.44
HOXA9P31269 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.04□□□□□ -1.44
HOXA9P31269 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
HOXA9P31269 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXA9P31269 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXA9P31269 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
HOXA9P31269 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
HOXA9P31269 GTF2IP4-201ENST00000453092 2054 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXA9P31269 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXA9P31269 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXA9P31269 AC117409.1-201ENST00000470499 1310 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXA9P31269 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXA9P31269 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
HOXA9P31269 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXA9P31269 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
HOXA9P31269 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
HOXA9P31269 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXA9P31269 SNORA58B-201ENST00000364259 136 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXA9P31269 AC009804.1-201ENST00000400949 179 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 SPTLC1P2-201ENST00000407089 121 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.03□□□□□ -1.44
HOXA9P31269 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXA9P31269 AL133173.1-201ENST00000423458 397 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 CLUHP1-201ENST00000435012 1190 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 OR7E116P-201ENST00000448529 957 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXA9P31269 RNU1-88P-201ENST00000459274 128 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 RN7SL515P-201ENST00000463999 297 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 AC073610.1-201ENST00000489971 396 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.03□□□□□ -1.44
HOXA9P31269 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXA9P31269 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXA9P31269 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.03□□□□□ -1.44
HOXA9P31269 AL049779.3-201ENST00000557141 606 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 HMGN2P47-201ENST00000559378 272 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXA9P31269 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXA9P31269 MIR132-201ENST00000591554 101 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 FKBP1AP1-201ENST00000594588 318 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 PPATP2-201ENST00000605635 508 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 AC008115.4-201ENST00000619780 775 ntBASIC6.03□□□□□ -1.44
HOXA9P31269 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXA9P31269 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.03□□□□□ -1.44
HOXA9P31269 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXA9P31269 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HOXA9P31269 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HOXA9P31269 SAMMSON-210ENST00000641260 1308 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
HOXA9P31269 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXA9P31269 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
HOXA9P31269 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.02□□□□□ -1.45
HOXA9P31269 AL132656.3-201ENST00000606384 1595 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
HOXA9P31269 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC6.02□□□□□ -1.45
HOXA9P31269 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXA9P31269 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXA9P31269 AL033543.1-201ENST00000623440 13454 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXA9P31269 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
HOXA9P31269 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HOXA9P31269 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.02□□□□□ -1.45
HOXA9P31269 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXA9P31269 RNU1-19P-201ENST00000363306 165 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 RNA5SP30-201ENST00000365552 115 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC6.02□□□□□ -1.45
HOXA9P31269 RNU6-171P-201ENST00000384354 107 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 RPS17P17-201ENST00000419392 409 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 NENFP1-201ENST00000419476 466 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC6.02□□□□□ -1.45
HOXA9P31269 RPL34P27-201ENST00000428810 349 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.02□□□□□ -1.45
HOXA9P31269 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC6.02□□□□□ -1.45
HOXA9P31269 AL450023.1-201ENST00000450868 751 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 AL606490.1-201ENST00000452266 765 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 SBDSP1-204ENST00000453858 737 ntBASIC6.02□□□□□ -1.45
HOXA9P31269 AC006539.1-201ENST00000481419 501 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms