Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MTND3P6-201ENST00000485242 339 ntBASIC5.82□□□□□ -1.48
MSH3P20585 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.82□□□□□ -1.48
MSH3P20585 AC114781.3-201ENST00000512083 142 ntBASIC5.82□□□□□ -1.48
MSH3P20585 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 MIR2117-201ENST00000516780 80 ntBASIC5.82□□□□□ -1.48
MSH3P20585 AC060775.1-201ENST00000518241 520 ntBASIC5.82□□□□□ -1.48
MSH3P20585 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.82□□□□□ -1.48
MSH3P20585 AP000619.2-201ENST00000546014 969 ntBASIC5.82□□□□□ -1.48
MSH3P20585 AC006530.1-201ENST00000555980 571 ntBASIC5.82□□□□□ -1.48
MSH3P20585 NDUFA5P11-201ENST00000567995 343 ntBASIC5.82□□□□□ -1.48
MSH3P20585 AC092121.1-201ENST00000569452 202 ntBASIC5.82□□□□□ -1.48
MSH3P20585 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.82□□□□□ -1.48
MSH3P20585 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 AC005726.4-201ENST00000582858 458 ntBASIC5.82□□□□□ -1.48
MSH3P20585 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 RPL12P48-201ENST00000605620 304 ntBASIC5.82□□□□□ -1.48
MSH3P20585 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.82□□□□□ -1.48
MSH3P20585 AC243960.7-201ENST00000623532 707 ntBASIC5.82□□□□□ -1.48
MSH3P20585 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
MSH3P20585 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
MSH3P20585 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSH3P20585 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
MSH3P20585 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
MSH3P20585 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 PDZK1P1-202ENST00000425209 1350 ntBASIC5.81□□□□□ -1.48
MSH3P20585 AC092070.2-203ENST00000598377 3644 ntBASIC5.81□□□□□ -1.48
MSH3P20585 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 AL035660.1-201ENST00000422041 222 ntBASIC5.81□□□□□ -1.48
MSH3P20585 KCTD9P1-201ENST00000430462 1167 ntBASIC5.81□□□□□ -1.48
MSH3P20585 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.81□□□□□ -1.48
MSH3P20585 RPS12P17-201ENST00000438591 377 ntBASIC5.81□□□□□ -1.48
MSH3P20585 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 HLA-DPA3-207ENST00000454398 229 ntBASIC5.81□□□□□ -1.48
MSH3P20585 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 AC094085.1-201ENST00000468914 584 ntBASIC5.81□□□□□ -1.48
MSH3P20585 RPL38P3-201ENST00000484463 213 ntBASIC5.81□□□□□ -1.48
MSH3P20585 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.81□□□□□ -1.48
MSH3P20585 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.81□□□□□ -1.48
MSH3P20585 MTND2P31-201ENST00000512602 616 ntBASIC5.81□□□□□ -1.48
MSH3P20585 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.81□□□□□ -1.48
MSH3P20585 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.81□□□□□ -1.48
MSH3P20585 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 AC068305.2-201ENST00000550567 1205 ntBASIC5.81□□□□□ -1.48
MSH3P20585 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.81□□□□□ -1.48
MSH3P20585 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 AL133406.3-201ENST00000606817 541 ntBASIC5.81□□□□□ -1.48
MSH3P20585 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.81□□□□□ -1.48
MSH3P20585 AL096712.1-201ENST00000614561 159 ntBASIC5.81□□□□□ -1.48
MSH3P20585 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 AC022400.9-201ENST00000623633 273 ntBASIC5.81□□□□□ -1.48
MSH3P20585 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 OR11H2-202ENST00000641517 1085 ntBASIC5.81□□□□□ -1.48
MSH3P20585 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
MSH3P20585 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 AL158152.1-201ENST00000602652 1435 ntBASIC5.81□□□□□ -1.48
MSH3P20585 AC232271.1-201ENST00000602455 2715 ntBASIC5.81□□□□□ -1.48
MSH3P20585 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSH3P20585 AL442128.2-201ENST00000620246 1824 ntBASIC5.81□□□□□ -1.48
MSH3P20585 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
MSH3P20585 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
MSH3P20585 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
MSH3P20585 AL359955.1-201ENST00000455242 3275 ntBASIC5.8□□□□□ -1.48
MSH3P20585 NLRP3P1-201ENST00000622303 1785 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms