Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC016489.1-201ENST00000461109 375 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC004801.2-201ENST00000468202 779 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC016687.1-201ENST00000482574 353 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 RPL23AP10-201ENST00000489946 466 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 RN7SL598P-201ENST00000494391 294 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 CFL1P5-201ENST00000508046 502 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC120193.1-204ENST00000519689 651 ntTSL 4 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC068305.2-201ENST00000550567 1205 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC025280.1-201ENST00000562393 260 ntTSL 2 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC010536.2-201ENST00000563036 338 ntTSL 3 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC018558.5-201ENST00000565840 952 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC141257.3-201ENST00000572906 215 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC115621.1-201ENST00000604653 858 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 APOOP1-201ENST00000604695 592 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 BNIP3P4-201ENST00000604946 565 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AL592436.1-201ENST00000605135 558 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AL355810.1-201ENST00000614629 552 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 Metazoa_SRP.165-201ENST00000615681 260 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AL359757.2-201ENST00000624309 274 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC005618.4-201ENST00000625053 554 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC063952.1-203ENST00000634410 658 ntBASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF649-201ENST00000354957 3197 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 DGKG-203ENST00000382164 3152 ntTSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 SLC24A1-211ENST00000544319 3169 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 PHF6-204ENST00000370803 4489 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 ATG13-203ENST00000524625 4014 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 UGT2B28-201ENST00000335568 1833 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 SLC31A1-201ENST00000374212 4744 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 PHF21A-201ENST00000323180 3675 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 LINC01721-201ENST00000457274 2376 ntTSL 2 BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 HEATR6-201ENST00000184956 3932 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
VPS9D1Q9Y2B5 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 USP40-203ENST00000427112 3744 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 ELMO2-202ENST00000352077 2157 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 ASB15-205ENST00000451215 2956 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 MS4A6A-203ENST00000426738 1736 ntTSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF562-208ENST00000590155 1712 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 FBXW7-207ENST00000603841 2261 ntAPPRIS P4 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 CEP85-209ENST00000640292 2286 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 ZNF136-201ENST00000343979 3643 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 EGF-204ENST00000503392 3642 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 CYP19A1-216ENST00000559878 1958 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 TTC39A-212ENST00000447632 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 MAP3K13-203ENST00000424227 3156 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 ACTBP13-201ENST00000423971 3959 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 TRIM55-204ENST00000353317 2624 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 HEATR5A-201ENST00000382464 507 ntTSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SNORA14B-201ENST00000384452 135 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 IGLV11-55-201ENST00000390286 381 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SNORA57.2-201ENST00000391265 128 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 FGFR1OP2P1-201ENST00000395943 500 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AL138807.1-201ENST00000400354 459 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AL136968.2-201ENST00000407959 354 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SNORA73.3-201ENST00000410213 189 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC023141.1-201ENST00000419418 379 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC083875.1-201ENST00000419509 405 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AL160004.2-201ENST00000432935 350 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC015983.1-201ENST00000441577 373 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC092431.2-201ENST00000441658 318 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 LDHAP3-201ENST00000448312 1008 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 HMGB3P22-202ENST00000451823 572 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 RANP1-206ENST00000455094 651 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 DISC1-IT1-201ENST00000456782 762 ntTSL 3 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 RN7SL520P-201ENST00000474110 286 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 MTCO1P29-201ENST00000496868 288 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC106774.1-201ENST00000515105 321 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 SNORA40.12-201ENST00000516329 111 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 RNU6-635P-201ENST00000516651 102 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AP000827.1-201ENST00000527814 258 ntBASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 ST3GAL4-219ENST00000534457 987 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 ANAPC15-211ENST00000542531 812 ntAPPRIS P3 TSL 5 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 AL157955.2-202ENST00000553921 467 ntTSL 3 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC8.32□□□□□ -1.08
VPS9D1Q9Y2B5 MTCO2P22-201ENST00000603246 681 ntBASIC8.32□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms