Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AC005294.1-201ENST00000355509 281 ntBASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AL450023.1-201ENST00000450868 751 ntBASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 HSPE1P2-201ENST00000554777 306 ntBASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 NOP10-202ENST00000557912 436 ntTSL 2 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 MIR4330-201ENST00000579077 105 ntBASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AC008115.3-201ENST00000614874 549 ntBASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AP000550.3-201ENST00000637734 379 ntBASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 FBXL21-201ENST00000297158 1305 ntBASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
SHROOM4Q9ULL8 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 RNA5SP339-201ENST00000390987 122 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 RN7SKP151-201ENST00000410230 316 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AC108075.1-201ENST00000424692 529 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AC079922.1-201ENST00000443291 359 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 SCARNA6.1-201ENST00000516989 238 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 RBM22P12-201ENST00000567098 1255 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AC133644.2-201ENST00000608142 540 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AC090510.2-201ENST00000617465 629 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 RNVU1-6-201ENST00000364688 164 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AC007686.1-201ENST00000488511 463 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AC126177.5-201ENST00000549599 178 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 AC074050.1-201ENST00000563247 211 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 OR1F2P-201ENST00000570470 933 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 uc_338.18-201ENST00000615451 175 ntBASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SHROOM4Q9ULL8 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AC006511.3-201ENST00000624929 1783 ntBASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AC099654.3-201ENST00000447087 1546 ntBASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 RNA5SP87-201ENST00000384155 118 ntBASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AC116036.1-201ENST00000412199 367 ntBASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AL353626.3-201ENST00000413399 657 ntBASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 GSTA7P-201ENST00000438425 448 ntBASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AC072052.1-201ENST00000496556 306 ntBASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
SHROOM4Q9ULL8 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AC114786.1-201ENST00000512892 1415 ntBASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AC131971.1-201ENST00000332881 1482 ntBASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 MYL6P5-201ENST00000412707 459 ntBASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AC023141.8-201ENST00000442554 208 ntBASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AF230666.2-201ENST00000602328 725 ntBASIC10.91□□□□□ -0.66
SHROOM4Q9ULL8 AC010245.2-201ENST00000606908 1167 ntBASIC10.91□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms