Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 RNA5SP394-201ENST00000364216 119 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 HMGB1P20-201ENST00000402555 677 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 RPS21P8-201ENST00000413365 247 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC007161.1-204ENST00000423039 460 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 OR6C71P-201ENST00000432580 913 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 ARL4AP4-201ENST00000434170 518 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 NPM1P18-201ENST00000434232 732 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AL157385.1-201ENST00000446973 268 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 MTND4LP12-201ENST00000448237 295 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 RN7SL741P-201ENST00000482473 289 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC021106.1-201ENST00000509020 1058 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 SNORA70.20-201ENST00000516848 126 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 HMGB1P42-201ENST00000532126 553 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 OR5AM1P-201ENST00000532136 1032 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 MIR4271-201ENST00000582451 67 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC067773.1-201ENST00000603284 1094 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC025574.2-201ENST00000615621 514 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 MIR6071-201ENST00000616741 78 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AL359742.1-201ENST00000622497 540 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AL355306.2-203ENST00000635102 1025 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AL137058.3-201ENST00000624531 3099 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.04□□□□□ -1.44
SIX2Q9NPC8 SAMM50P1-201ENST00000455403 1399 ntBASIC6.04□□□□□ -1.44
SIX2Q9NPC8 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC084782.1-201ENST00000564401 2465 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 RNA5SP131-201ENST00000365452 119 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 CCL7-202ENST00000394627 696 ntTSL 3 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AL133482.1-201ENST00000415988 498 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 NXT1P1-201ENST00000458481 316 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 ACA64.1-201ENST00000459171 127 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 RNU6-775P-201ENST00000459318 96 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 OR4A17P-201ENST00000526032 904 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 PMS2P3-207ENST00000529061 717 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 TOMM20P1-201ENST00000534518 427 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC115989.2-201ENST00000578640 563 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC027243.2-201ENST00000602530 724 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC007786.3-201ENST00000615154 596 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC010809.3-201ENST00000621310 641 ntBASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.03□□□□□ -1.44
SIX2Q9NPC8 SRRM1P3-201ENST00000426911 2678 ntBASIC6.02□□□□□ -1.44
SIX2Q9NPC8 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 OR52B3P-201ENST00000314715 928 ntBASIC6.02□□□□□ -1.45
SIX2Q9NPC8 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.02□□□□□ -1.45
SIX2Q9NPC8 U3.28-201ENST00000391249 210 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms