| MUC4 | Q99102 | CASP12-206 | ENST00000446862 | 1196 nt | TSL 1 (best) BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC018742.1-202 | ENST00000457901 | 504 nt | TSL 3 BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | PDCL3P4-201 | ENST00000489621 | 720 nt | BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC006499.3-201 | ENST00000506077 | 748 nt | BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | SSX6-203 | ENST00000509958 | 336 nt | TSL 3 BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | TPM3P3-201 | ENST00000521343 | 354 nt | BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC01151-201 | ENST00000521608 | 571 nt | TSL 4 BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | TEX49-202 | ENST00000548380 | 573 nt | APPRIS P1 TSL 1 (best) BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC135626.1-201 | ENST00000556983 | 435 nt | BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | THCAT158-201 | ENST00000575039 | 535 nt | TSL 5 BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AL132655.1-201 | ENST00000601795 | 1153 nt | TSL 3 BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC073333.2-201 | ENST00000603589 | 769 nt | BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC145423.1-201 | ENST00000605712 | 336 nt | BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC093388.1-201 | ENST00000609166 | 430 nt | BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | TADA2A-212 | ENST00000620367 | 1043 nt | TSL 5 BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AL139220.2-221 | ENST00000628123 | 395 nt | TSL 5 BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC00850-201 | ENST00000629221 | 685 nt | TSL 1 (best) BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | GRIA4-204 | ENST00000428631 | 2778 nt | TSL 1 (best) BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | OOSP2-201 | ENST00000278855 | 1633 nt | APPRIS P2 TSL 1 (best) BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | BX284613.1-201 | ENST00000452221 | 1641 nt | BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | GTF2H5-201 | ENST00000607778 | 7481 nt | APPRIS P1 TSL 1 (best) BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | CTAGE5-204 | ENST00000341749 | 2912 nt | TSL 1 (best) BASIC | 4.3 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | PLEKHA5-202 | ENST00000424268 | 4391 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | FHL1-218 | ENST00000543669 | 2878 nt | TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | MCM8-201 | ENST00000265187 | 3442 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | OR2J1-202 | ENST00000641659 | 2144 nt | APPRIS P1 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LRRC7-202 | ENST00000310961 | 6507 nt | APPRIS ALT2 TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | ENKUR-201 | ENST00000331161 | 3382 nt | APPRIS P2 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | SDHC-202 | ENST00000367975 | 13566 nt | APPRIS P1 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | CCNT1-205 | ENST00000618666 | 6915 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | SYCP2L-207 | ENST00000543878 | 2436 nt | APPRIS ALT2 TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | METTL6-203 | ENST00000443029 | 4020 nt | APPRIS P1 TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | TTBK2-201 | ENST00000267890 | 10905 nt | APPRIS P2 TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AL136985.3-202 | ENST00000636386 | 2708 nt | TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC02397-201 | ENST00000504409 | 10626 nt | TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | CPEB4-202 | ENST00000334035 | 6705 nt | TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | SUCLG1-201 | ENST00000393868 | 1475 nt | APPRIS P1 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AP001157.1-201 | ENST00000550837 | 2339 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | SNORA21-201 | ENST00000362423 | 132 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | U3.7-201 | ENST00000363668 | 216 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AL157938.2-207 | ENST00000415391 | 884 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC068286.1-201 | ENST00000416173 | 467 nt | TSL 4 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RPS15AP30-201 | ENST00000420976 | 390 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | DPYD-IT1-201 | ENST00000424982 | 401 nt | TSL 3 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC01435-201 | ENST00000425050 | 722 nt | TSL 3 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RPSAP65-201 | ENST00000429660 | 595 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RPL6P30-201 | ENST00000443382 | 862 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RPL21P133-201 | ENST00000443666 | 476 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RSU1P1-201 | ENST00000453416 | 441 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC093270.2-201 | ENST00000486157 | 792 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | MOSPD2-206 | ENST00000497603 | 775 nt | TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC00861-202 | ENST00000517869 | 606 nt | TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | OR7E158P-201 | ENST00000524483 | 910 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AP003306.1-201 | ENST00000529875 | 353 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC02392-201 | ENST00000548172 | 537 nt | TSL 4 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | BICD1-206 | ENST00000551086 | 423 nt | TSL 3 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC02129-201 | ENST00000564381 | 692 nt | TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | ZNF738-205 | ENST00000597810 | 747 nt | APPRIS ALT2 TSL 3 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC025857.2-201 | ENST00000602711 | 238 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AL133481.2-203 | ENST00000607558 | 139 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AL357562.1-201 | ENST00000624911 | 609 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC099673.1-201 | ENST00000452199 | 2296 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | C16orf87-202 | ENST00000394806 | 6640 nt | TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | ATP13A4-202 | ENST00000342695 | 4208 nt | APPRIS P1 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | PTBP3-202 | ENST00000334318 | 7990 nt | APPRIS ALT1 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | KLHL13-206 | ENST00000469946 | 2353 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | MAPKAPK5P1-201 | ENST00000431810 | 1376 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC010168.2-201 | ENST00000562691 | 5428 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | MFSD8-219 | ENST00000641228 | 2559 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC00240-204 | ENST00000607607 | 5607 nt | TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC098679.1-203 | ENST00000505532 | 2227 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC01277-201 | ENST00000419957 | 2398 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | NCOA7-208 | ENST00000438495 | 3133 nt | APPRIS ALT1 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | ECT2L-205 | ENST00000541398 | 4483 nt | APPRIS P1 TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | ZNF33B-201 | ENST00000359467 | 5958 nt | APPRIS P2 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | SPINK7-201 | ENST00000274565 | 557 nt | APPRIS P1 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RBMY1F-201 | ENST00000303766 | 1887 nt | APPRIS P5 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | WFDC11-202 | ENST00000356562 | 642 nt | APPRIS P1 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RN7SKP77-201 | ENST00000363261 | 353 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | U3.10-201 | ENST00000364459 | 214 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | CRP-204 | ENST00000368112 | 787 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | SNORA51.9-201 | ENST00000384295 | 124 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | MIR130B-202 | ENST00000385018 | 82 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RNU6-316P-201 | ENST00000391027 | 107 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | OR2A25-201 | ENST00000408898 | 1014 nt | APPRIS P1 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | MAGI2-AS3-204 | ENST00000426835 | 738 nt | TSL 3 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC099677.3-201 | ENST00000427081 | 395 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | KATNBL1P2-201 | ENST00000433311 | 835 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | NPSR1-AS1-206 | ENST00000439852 | 710 nt | TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AL158850.1-201 | ENST00000441249 | 914 nt | TSL 3 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC092168.1-201 | ENST00000443030 | 236 nt | TSL 5 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | SDCBP-205 | ENST00000447267 | 772 nt | TSL 3 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC091685.2-201 | ENST00000454924 | 864 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RN7SL352P-201 | ENST00000466002 | 277 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC092865.4-201 | ENST00000477936 | 615 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | RN7SL817P-201 | ENST00000480777 | 288 nt | BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | ZNF195-201 | ENST00000005082 | 2021 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | LINC02432-203 | ENST00000511213 | 719 nt | TSL 2 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AC093535.1-203 | ENST00000512500 | 730 nt | TSL 3 BASIC | 4.29 | □□□□□ -1.72 | | |
| MUC4 | Q99102 | AL671862.1-201 | ENST00000515851 | 349 nt | BASIC | 4.29 | □□□□□ -1.72 | | |