Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC106822.1-201ENST00000502647 526 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 SETP21-201ENST00000514799 892 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 RN7SKP253-201ENST00000516424 309 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 RN7SKP35-201ENST00000517210 151 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 AC116917.1-201ENST00000520558 305 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 CASP1P2-201ENST00000526830 1258 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 AP003396.4-201ENST00000527574 265 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 CASP5-209ENST00000531367 879 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 AC139792.1-201ENST00000607051 647 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 uc_338.29-201ENST00000615099 168 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 MIR6721-201ENST00000617181 87 ntBASIC6.09□□□□□ -1.43
CCDC42Q96M95 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC42Q96M95 AP000473.2-201ENST00000602659 1537 ntBASIC6.09□□□□□ -1.44
CCDC42Q96M95 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
CCDC42Q96M95 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
CCDC42Q96M95 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 PDZK1P1-202ENST00000425209 1350 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC079097.1-201ENST00000512187 1399 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 RNFT1P3-201ENST00000340898 1052 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 RN7SKP69-201ENST00000365390 305 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 AL139158.1-201ENST00000424719 340 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 NDUFB4P8-201ENST00000435351 367 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 NANOGP9-201ENST00000439890 892 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 CEACAMP11-201ENST00000455211 583 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 RN7SKP238-201ENST00000516483 249 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 BCAS2P1-201ENST00000528022 632 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC006530.1-201ENST00000555980 571 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC016839.1-201ENST00000578162 867 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 AC092266.1-201ENST00000610958 165 ntBASIC6.08□□□□□ -1.44
CCDC42Q96M95 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC42Q96M95 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
CCDC42Q96M95 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC42Q96M95 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC42Q96M95 AC018809.2-201ENST00000602436 3823 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
CCDC42Q96M95 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC42Q96M95 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CCDC42Q96M95 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC42Q96M95 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC42Q96M95 RNA5SP279-201ENST00000365513 117 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC42Q96M95 AL354890.1-201ENST00000413730 346 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 MRPL53P1-201ENST00000414323 319 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 AC079809.1-201ENST00000415468 276 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC42Q96M95 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC42Q96M95 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC42Q96M95 AC090602.1-201ENST00000469695 252 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 RN7SL188P-201ENST00000469842 285 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 AL122020.1-201ENST00000472287 459 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC42Q96M95 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC42Q96M95 IGLV3-30-201ENST00000524362 298 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 PMS2P3-207ENST00000529061 717 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 PCNAP4-201ENST00000532690 730 ntBASIC6.07□□□□□ -1.44
CCDC42Q96M95 OR4A41P-201ENST00000533053 928 ntBASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms