Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL683826.1-201ENST00000624104 627 ntBASIC5.89□□□□□ -1.47
VMP1Q96GC9 AP001052.1-201ENST00000626421 99 ntBASIC5.89□□□□□ -1.47
VMP1Q96GC9 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
VMP1Q96GC9 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.89□□□□□ -1.47
VMP1Q96GC9 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VMP1Q96GC9 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VMP1Q96GC9 AL078621.3-201ENST00000623707 2042 ntBASIC5.89□□□□□ -1.47
VMP1Q96GC9 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.89□□□□□ -1.47
VMP1Q96GC9 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
VMP1Q96GC9 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VMP1Q96GC9 CASC19-281ENST00000642118 1554 ntBASIC5.89□□□□□ -1.47
VMP1Q96GC9 AC087565.3-202ENST00000642085 1603 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VMP1Q96GC9 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VMP1Q96GC9 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
VMP1Q96GC9 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VMP1Q96GC9 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VMP1Q96GC9 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 MIR133A2-201ENST00000347538 102 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 RNA5SP478-201ENST00000364657 115 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AL157702.1-201ENST00000398764 426 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 VDAC2P1-201ENST00000399358 958 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 MIR1275-201ENST00000408770 80 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AL354868.1-201ENST00000417077 482 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 MTCYBP7-201ENST00000419540 1134 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 RPL24P2-201ENST00000421023 475 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC092865.3-201ENST00000425390 1026 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC108479.1-201ENST00000431142 427 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 GAPDHP59-201ENST00000435908 267 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AL022237.1-201ENST00000446663 358 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 NPM1P39-201ENST00000449818 867 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AL445687.2-201ENST00000458156 728 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 RN7SL254P-201ENST00000460609 284 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 OR9A1P-202ENST00000484361 945 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC018797.1-201ENST00000510791 255 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 ZNF519P4-201ENST00000514008 125 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 RNA5SP206-201ENST00000516703 121 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC008429.4-201ENST00000521201 182 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VMP1Q96GC9 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC004232.2-201ENST00000574245 821 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC124856.1-201ENST00000600819 896 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AL137072.1-201ENST00000603444 466 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 RPSAP75-201ENST00000605848 301 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC019131.2-201ENST00000609071 870 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AL445649.1-201ENST00000615941 691 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC024884.1-201ENST00000620583 399 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VMP1Q96GC9 NXF4-202ENST00000416098 1465 ntBASIC5.88□□□□□ -1.47
VMP1Q96GC9 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VMP1Q96GC9 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.88□□□□□ -1.47
VMP1Q96GC9 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 AC107977.1-201ENST00000355745 939 ntBASIC5.87□□□□□ -1.47
VMP1Q96GC9 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 RNU1-65P-201ENST00000363919 148 ntBASIC5.87□□□□□ -1.47
VMP1Q96GC9 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.87□□□□□ -1.47
VMP1Q96GC9 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 AC007562.1-201ENST00000421819 517 ntBASIC5.87□□□□□ -1.47
VMP1Q96GC9 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.87□□□□□ -1.47
VMP1Q96GC9 NPM1P22-201ENST00000427761 952 ntBASIC5.87□□□□□ -1.47
VMP1Q96GC9 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
VMP1Q96GC9 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms