Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC012078.1-201ENST00000405035 1646 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SKA3Q8IX90 AF287957.1-201ENST00000607368 1595 ntBASIC5.21□□□□□ -1.58
SKA3Q8IX90 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC130304.1-201ENST00000622942 2385 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC097063.1-201ENST00000426714 1797 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 SNORD1C-201ENST00000363315 78 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 RNA5SP433-201ENST00000364491 114 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 RPS4XP5-201ENST00000419038 768 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 KIF4CP-201ENST00000422742 1279 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AL663074.2-201ENST00000440621 479 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AL603882.1-201ENST00000463059 681 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 PFN1P6-201ENST00000476786 399 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 OR4A42P-201ENST00000531397 938 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC090826.1-203ENST00000569235 490 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 AC134669.1-201ENST00000581275 672 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 SNX18P12-201ENST00000624821 759 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 OR8A1-204ENST00000642111 1145 ntBASIC5.2□□□□□ -1.58
SKA3Q8IX90 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SKA3Q8IX90 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
SKA3Q8IX90 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 AC027279.4-201ENST00000624371 2072 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SKA3Q8IX90 OR7E156P-201ENST00000400303 464 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 AL354890.1-201ENST00000413730 346 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 AC115283.1-201ENST00000427353 400 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 TUBB4BP6-201ENST00000437576 479 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 RPS12P17-201ENST00000438591 377 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 KRT8P51-201ENST00000438938 274 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 GEMIN2P1-201ENST00000454246 752 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 RN7SL193P-201ENST00000491708 276 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 TOMM22P4-201ENST00000511318 336 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 WBP1LP3-201ENST00000523033 208 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 OR4A43P-201ENST00000532938 908 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 TOMM20P1-201ENST00000534518 427 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 LINC00556-201ENST00000569603 412 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.19□□□□□ -1.58
SKA3Q8IX90 AL136131.3-201ENST00000607600 188 ntBASIC5.19□□□□□ -1.58
SKA3Q8IX90 MIR6071-201ENST00000616741 78 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms