Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 AC131971.1-201ENST00000332881 1482 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.01□□□□□ -1.45
COL4A4P53420 CYB5AP4-201ENST00000396692 399 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 GYG1P1-201ENST00000460864 698 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 RN7SL738P-201ENST00000470264 297 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 RN7SL570P-201ENST00000484405 292 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 AC093267.1-201ENST00000489176 961 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC6.01□□□□□ -1.45
COL4A4P53420 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC063977.5-201ENST00000601044 974 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 AC087385.3-201ENST00000620477 187 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC022893.2-201ENST00000564832 3296 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 AL662795.2-201ENST00000624252 3706 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 ABCA11P-202ENST00000504019 2110 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
COL4A4P53420 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 AP004289.1-201ENST00000436307 2205 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 RNVU1-6-201ENST00000364688 164 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 GNG5P2-201ENST00000372054 207 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 MRRF-207ENST00000373729 870 ntTSL 3 BASIC6.01□□□□□ -1.45
COL4A4P53420 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.01□□□□□ -1.45
COL4A4P53420 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 OSTCP1-201ENST00000455507 450 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC091153.1-201ENST00000466297 402 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 AC090142.2-201ENST00000483263 416 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 AP001804.1-201ENST00000526868 919 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC011840.5-201ENST00000582125 771 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC105105.5-201ENST00000622635 1294 ntBASIC6.01□□□□□ -1.45
COL4A4P53420 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.01□□□□□ -1.45
COL4A4P53420 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL4A4P53420 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.01□□□□□ -1.45
COL4A4P53420 AC022164.1-201ENST00000568767 2673 ntBASIC6□□□□□ -1.45
COL4A4P53420 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
COL4A4P53420 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 MAPK10-263ENST00000641052 4307 ntBASIC6□□□□□ -1.45
COL4A4P53420 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
COL4A4P53420 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 AC018809.2-201ENST00000602436 3823 ntBASIC6□□□□□ -1.45
COL4A4P53420 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
COL4A4P53420 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC6□□□□□ -1.45
COL4A4P53420 RNU4-4P-201ENST00000364588 130 ntBASIC6□□□□□ -1.45
COL4A4P53420 AL035419.1-201ENST00000397037 564 ntBASIC6□□□□□ -1.45
COL4A4P53420 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
COL4A4P53420 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6□□□□□ -1.45
COL4A4P53420 AC091390.1-201ENST00000433904 331 ntBASIC6□□□□□ -1.45
COL4A4P53420 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC6□□□□□ -1.45
COL4A4P53420 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6□□□□□ -1.45
COL4A4P53420 PDCL3P4-201ENST00000489621 720 ntBASIC6□□□□□ -1.45
COL4A4P53420 snoU109.5-201ENST00000516231 132 ntBASIC6□□□□□ -1.45
COL4A4P53420 AC013701.1-201ENST00000522657 465 ntBASIC6□□□□□ -1.45
COL4A4P53420 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC6□□□□□ -1.45
COL4A4P53420 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6□□□□□ -1.45
COL4A4P53420 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC6□□□□□ -1.45
COL4A4P53420 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6□□□□□ -1.45
COL4A4P53420 MAPK10-350ENST00000641777 965 ntBASIC6□□□□□ -1.45
COL4A4P53420 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC6□□□□□ -1.45
COL4A4P53420 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL4A4P53420 AC114947.2-201ENST00000565748 2125 ntBASIC6□□□□□ -1.45
COL4A4P53420 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms