Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC097463.1-201ENST00000447288 481 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AL358876.1-201ENST00000453364 1075 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC023194.2-201ENST00000465398 406 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 RN7SL269P-201ENST00000467795 305 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AL157777.1-201ENST00000468100 304 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 RN7SL284P-201ENST00000498823 275 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AL158068.1-201ENST00000506116 616 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 PRMT5P1-201ENST00000514351 598 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC110056.1-201ENST00000525759 911 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC027369.2-201ENST00000528030 440 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 CYCSP38-201ENST00000559840 322 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC008507.3-201ENST00000585753 472 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC068768.2-201ENST00000602352 343 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC067773.1-201ENST00000603284 1094 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC015982.1-201ENST00000608113 465 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC004801.6-201ENST00000616571 978 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AL353684.1-201ENST00000622677 1120 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC069542.2-201ENST00000624816 216 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC008627.1-201ENST00000517511 1704 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 EEF1A1P21-201ENST00000512363 1344 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC4.43□□□□□ -1.7
HLA-DMBP28068 GNL2P1-201ENST00000451274 2190 ntBASIC4.43□□□□□ -1.7
HLA-DMBP28068 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HLA-DMBP28068 AC097063.1-201ENST00000426714 1797 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC114774.1-201ENST00000507410 1770 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 RN7SKP275-201ENST00000364626 301 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 RPL35AP3-201ENST00000414680 288 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 METTL15P3-201ENST00000415522 1221 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 CRIP1P1-201ENST00000427567 185 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC242426.1-201ENST00000435270 960 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 DNAJA1P5-201ENST00000440278 943 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC073072.2-201ENST00000447425 348 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 AL445466.1-201ENST00000448432 357 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 PPIAP27-201ENST00000453800 265 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 DEFB109A-201ENST00000482450 265 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 LDHAP1-201ENST00000509421 992 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC090568.1-201ENST00000509499 856 ntBASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 OTX2-203ENST00000554559 715 ntTSL 5 BASIC4.42□□□□□ -1.7
HLA-DMBP28068 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms