Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXD4P09016 AC092967.1-201ENST00000449016 481 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AC023141.9-201ENST00000458734 412 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 RN7SL193P-201ENST00000491708 276 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 MORF4L2P1-201ENST00000503761 858 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXD4P09016 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXD4P09016 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXD4P09016 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 AC110056.1-201ENST00000525759 911 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXD4P09016 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXD4P09016 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXD4P09016 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXD4P09016 AL121579.2-201ENST00000555466 590 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AC135626.1-201ENST00000556983 435 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXD4P09016 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXD4P09016 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXD4P09016 AC022467.1-201ENST00000614738 749 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AL136228.1-201ENST00000622221 319 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AL137058.3-201ENST00000624531 3099 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXD4P09016 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
HOXD4P09016 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
HOXD4P09016 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXD4P09016 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 AC027088.4-201ENST00000611559 1947 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 SNORA5.1-201ENST00000384275 131 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AC016739.1-201ENST00000405359 345 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 MIR1203-201ENST00000408812 85 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXD4P09016 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 YY1P1-201ENST00000427625 668 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXD4P09016 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 AP006222.1-205ENST00000450734 457 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 GEMIN2P1-201ENST00000454246 752 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 RPS27AP2-201ENST00000457576 465 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AC023245.1-201ENST00000468501 517 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AC091917.2-201ENST00000505002 744 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 MTCO3P42-201ENST00000509488 518 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 MTCO3P39-201ENST00000514812 518 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.43□□□□□ -1.54
HOXD4P09016 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 AC092865.1-201ENST00000544395 1023 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXD4P09016 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 ZNF322P1-201ENST00000568013 1209 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.43□□□□□ -1.54
HOXD4P09016 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.43□□□□□ -1.54
HOXD4P09016 AL512624.1-201ENST00000613638 469 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 MIR6826-201ENST00000617808 98 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC5.43□□□□□ -1.54
HOXD4P09016 AL049767.1-202ENST00000637826 242 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
HOXD4P09016 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.43□□□□□ -1.54
HOXD4P09016 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXD4P09016 AC011815.2-201ENST00000618230 2021 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AC090220.1-201ENST00000593078 1699 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 CCNT2P1-201ENST00000423082 1315 ntBASIC5.43□□□□□ -1.54
HOXD4P09016 AF287957.1-201ENST00000607368 1595 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
HOXD4P09016 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
HOXD4P09016 AC005261.2-201ENST00000593427 4258 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.42□□□□□ -1.54
HOXD4P09016 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
HOXD4P09016 MIR143-201ENST00000385300 106 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 AL121835.1-201ENST00000404250 354 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 RN7SKP293-201ENST00000411389 296 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.42□□□□□ -1.54
HOXD4P09016 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXD4P09016 AL121776.1-201ENST00000429337 372 ntBASIC5.42□□□□□ -1.54
HOXD4P09016 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.42□□□□□ -1.54
HOXD4P09016 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms