Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL360271.1-201ENST00000395679 510 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AL356131.1-201ENST00000405826 414 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 CYP2AC1P-201ENST00000407830 1173 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 RN7SKP97-201ENST00000410966 333 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 PPIAP23-201ENST00000420099 497 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 ELOBP4-201ENST00000423418 296 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 RPL23AP28-201ENST00000448062 470 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 ATG12P2-201ENST00000456830 416 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 MTCYBP14-201ENST00000457471 715 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 SRRM1P2-201ENST00000464531 1192 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 MTND3P5-201ENST00000512798 333 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 RNU6-276P-201ENST00000516114 96 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC091163.3-201ENST00000518269 1144 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 CKS1BP1-201ENST00000555221 240 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 MIR378C-201ENST00000578683 81 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 FCGR1CP-201ENST00000579737 1127 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 HIRAP1-201ENST00000605318 787 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC106782.7-201ENST00000624024 418 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AP000577.1-201ENST00000624366 878 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC133555.5-201ENST00000624430 418 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 ZNF806-201ENST00000438300 1774 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC011369.2-201ENST00000624423 1567 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR4G1P-202ENST00000641173 1788 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR7D4-201ENST00000308682 1022 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 RNA5SP302-201ENST00000364896 100 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 LCN1P2-201ENST00000372030 223 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR13C3-201ENST00000374781 1108 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 MIR187-201ENST00000385062 109 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 LSM5-203ENST00000409782 649 ntTSL 5 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 RMRPP5-201ENST00000411156 267 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AL139135.1-201ENST00000412675 209 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC091492.1-201ENST00000419844 272 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 OR5M12P-201ENST00000423388 929 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AL590128.1-201ENST00000433407 286 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AL354893.1-201ENST00000433735 348 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AL592114.2-201ENST00000440142 532 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 LINC01832-201ENST00000446520 553 ntTSL 4 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 RPL7AP71-201ENST00000451120 739 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 RPS3AP43-201ENST00000479743 781 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC010460.1-201ENST00000507087 466 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC008565.1-201ENST00000509046 885 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AC114940.1-201ENST00000512162 1265 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 MTATP6P1-201ENST00000514057 681 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AP005639.1-201ENST00000526939 192 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
CCDC39Q9UFE4 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC7.59□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms