Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
VPS35Q96QK1 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 MAPK10-338ENST00000641647 3362 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 TMSB4XP2-201ENST00000335179 210 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 RNA5SP500-201ENST00000364486 119 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 MIR1282-201ENST00000408865 101 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 RPS26P38-201ENST00000414476 348 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 CDY8P-201ENST00000428380 1279 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 PCBP2P1-201ENST00000437262 977 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 CDY20P-201ENST00000447528 1279 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC099521.1-201ENST00000482557 334 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 TRBV5-2-201ENST00000489095 273 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 RN7SL57P-201ENST00000493687 290 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC006530.1-201ENST00000555980 571 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC090888.3-201ENST00000558917 509 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 GARSP1-201ENST00000570895 719 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 OOSP1P2-201ENST00000579644 351 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC006115.2-201ENST00000596823 202 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AL359742.1-201ENST00000622497 540 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC004158.1-201ENST00000564508 4319 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 AC005224.3-201ENST00000584683 2140 ntBASIC5.83□□□□□ -1.48
VPS35Q96QK1 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
VPS35Q96QK1 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
VPS35Q96QK1 ZNF101P1-201ENST00000435701 1720 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS35Q96QK1 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS35Q96QK1 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC092451.3-201ENST00000625067 1343 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC020656.2-201ENST00000613291 5309 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS35Q96QK1 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS35Q96QK1 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS35Q96QK1 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 NPM1P38-201ENST00000403835 865 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC002069.1-201ENST00000429649 1159 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS35Q96QK1 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 HLA-DPA3-207ENST00000454398 229 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC117394.1-201ENST00000477323 567 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 TOMM22P4-201ENST00000511318 336 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AL121594.2-201ENST00000541658 472 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC090286.3-201ENST00000573133 187 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
VPS35Q96QK1 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
VPS35Q96QK1 AC015849.6-201ENST00000605454 474 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 AL357153.4-201ENST00000620487 1016 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 SNX18P12-201ENST00000624821 759 ntBASIC5.82□□□□□ -1.48
VPS35Q96QK1 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms