Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.6□□□□□ -1.51
CLIP4Q8N3C7 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CLIP4Q8N3C7 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.6□□□□□ -1.51
CLIP4Q8N3C7 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CLIP4Q8N3C7 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CLIP4Q8N3C7 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.6□□□□□ -1.51
CLIP4Q8N3C7 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CLIP4Q8N3C7 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CLIP4Q8N3C7 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 RNU105B-201ENST00000364478 208 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 MIR551B-201ENST00000384984 96 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AL050305.1-201ENST00000399993 1230 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AL139805.1-201ENST00000407837 289 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AL096829.1-201ENST00000413677 457 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 RPS15AP30-201ENST00000420976 390 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 SFR1P2-201ENST00000421841 730 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AC073310.1-201ENST00000423226 1033 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 PSMD10P2-201ENST00000432890 672 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 RPS3AP38-201ENST00000435889 763 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 OR3D1P-201ENST00000438288 955 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 RPL23AP40-201ENST00000487630 390 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 SNX18P25-201ENST00000510539 758 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AC130364.2-201ENST00000528639 604 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AC026979.4-201ENST00000606555 645 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AP000550.3-201ENST00000637734 379 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AC010325.3-201ENST00000641084 394 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 AC015689.2-201ENST00000528172 1738 ntBASIC5.59□□□□□ -1.51
CLIP4Q8N3C7 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.52
CLIP4Q8N3C7 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CLIP4Q8N3C7 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
CLIP4Q8N3C7 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CLIP4Q8N3C7 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.52
CLIP4Q8N3C7 BCORP1-203ENST00000513194 5093 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC239868.2-201ENST00000564237 4527 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC018809.2-201ENST00000602436 3823 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC005261.6-201ENST00000623072 1387 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 RNA5SP110-201ENST00000362638 115 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AL121977.1-201ENST00000401636 979 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AL355143.1-201ENST00000407101 841 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 RN7SKP108-201ENST00000411367 328 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AL357078.2-201ENST00000416486 427 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 MTND4LP7-201ENST00000431728 294 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 USP24P1-201ENST00000433802 779 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC097359.1-201ENST00000447946 463 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AL353718.1-201ENST00000451028 517 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 ACA64.4-201ENST00000459070 127 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms