Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
FOXA1P55317 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.45□□□□□ -1.54
FOXA1P55317 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.45□□□□□ -1.54
FOXA1P55317 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.45□□□□□ -1.54
FOXA1P55317 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.45□□□□□ -1.54
FOXA1P55317 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 RNA5SP30-201ENST00000365552 115 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
FOXA1P55317 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 RPSAP35-201ENST00000413753 818 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 AKR1B10P1-201ENST00000425765 942 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 AC009784.1-201ENST00000426484 460 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.45□□□□□ -1.54
FOXA1P55317 AL359265.1-201ENST00000440296 795 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.45□□□□□ -1.54
FOXA1P55317 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 RPS17P15-201ENST00000475609 349 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 AC114781.3-201ENST00000512083 142 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.45□□□□□ -1.54
FOXA1P55317 SEPT10P1-201ENST00000517342 1162 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 OR4A17P-201ENST00000526032 904 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.45□□□□□ -1.54
FOXA1P55317 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.45□□□□□ -1.54
FOXA1P55317 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.45□□□□□ -1.54
FOXA1P55317 MIR4260-201ENST00000583107 67 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.45□□□□□ -1.54
FOXA1P55317 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 AC009237.13-201ENST00000603193 276 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 FAM27E4-201ENST00000605259 342 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 AC021766.1-201ENST00000624404 741 ntBASIC5.45□□□□□ -1.54
FOXA1P55317 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.45□□□□□ -1.54
FOXA1P55317 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
FOXA1P55317 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
FOXA1P55317 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
FOXA1P55317 AP001029.2-203ENST00000589795 4910 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 RNF10P1-201ENST00000418589 369 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.44□□□□□ -1.54
FOXA1P55317 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC093166.3-201ENST00000448785 303 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 AC068491.1-201ENST00000449539 1241 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 PPIA-203ENST00000451562 544 ntTSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.44□□□□□ -1.54
FOXA1P55317 AL117692.1-201ENST00000494283 713 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 LSM3P4-201ENST00000502948 309 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 RN7SKP183-201ENST00000517169 324 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.44□□□□□ -1.54
FOXA1P55317 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC068305.2-201ENST00000550567 1205 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC063977.5-201ENST00000601044 974 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 AC010632.3-201ENST00000611377 369 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 AC090607.5-201ENST00000615692 224 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 MIR6806-201ENST00000622141 64 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.44□□□□□ -1.54
FOXA1P55317 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
FOXA1P55317 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
FOXA1P55317 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 AC144833.1-201ENST00000567953 4089 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms