Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
HOXA1P49639 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.6
HOXA1P49639 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
HOXA1P49639 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 AC010132.4-201ENST00000569883 1368 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 PPIAP24-201ENST00000328558 471 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 SNORD16-201ENST00000362803 99 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 GCNT6-201ENST00000379591 934 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 U3.52-201ENST00000384034 216 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 EEF1GP6-201ENST00000402309 905 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 RN7SKP91-201ENST00000410852 288 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC5.08□□□□□ -1.6
HOXA1P49639 RPL18AP14-201ENST00000417685 526 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC007562.1-201ENST00000421819 517 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 AC138761.5-201ENST00000433967 325 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 MED28P3-201ENST00000444288 531 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AC023274.2-201ENST00000445264 521 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 CCNJP1-201ENST00000450600 1149 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 RN7SKP198-201ENST00000459286 306 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC108729.2-201ENST00000476543 840 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AC090543.1-201ENST00000492168 485 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 AP001372.3-201ENST00000530510 609 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXA1P49639 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC233702.9-201ENST00000581528 203 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 MIR3936-201ENST00000584304 110 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AC015911.5-201ENST00000587076 451 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC5.08□□□□□ -1.6
HOXA1P49639 ABI1P1-201ENST00000603375 1120 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AC023206.1-201ENST00000605824 298 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AC026979.4-201ENST00000606555 645 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 AC103564.3-201ENST00000621194 220 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 AC005514.1-201ENST00000623521 208 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXA1P49639 OR7E91P-202ENST00000642062 1198 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 CUL4AP1-201ENST00000514750 1863 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 ICE2P1-201ENST00000512800 1849 ntBASIC5.08□□□□□ -1.6
HOXA1P49639 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
HOXA1P49639 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HOXA1P49639 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXA1P49639 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXA1P49639 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXA1P49639 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXA1P49639 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXA1P49639 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXA1P49639 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXA1P49639 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXA1P49639 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HOXA1P49639 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HOXA1P49639 RGS5-202ENST00000367903 934 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXA1P49639 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXA1P49639 RSL24D1P1-201ENST00000404972 493 ntBASIC5.07□□□□□ -1.6
HOXA1P49639 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXA1P49639 RN7SKP286-201ENST00000410894 299 ntBASIC5.07□□□□□ -1.6
HOXA1P49639 AL139135.1-201ENST00000412675 209 ntBASIC5.07□□□□□ -1.6
HOXA1P49639 NPM1P40-201ENST00000412758 733 ntBASIC5.07□□□□□ -1.6
HOXA1P49639 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXA1P49639 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXA1P49639 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.07□□□□□ -1.6
HOXA1P49639 AL139184.1-202ENST00000422303 222 ntBASIC5.07□□□□□ -1.6
HOXA1P49639 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXA1P49639 USP24P1-201ENST00000433802 779 ntBASIC5.07□□□□□ -1.6
HOXA1P49639 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXA1P49639 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXA1P49639 LINC00349-201ENST00000448748 841 ntTSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms