Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.69□□□□□ -1.5
SHMT2P34897 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SHMT2P34897 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 OR52B3P-201ENST00000314715 928 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SHMT2P34897 RNA5SP453-201ENST00000362503 119 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 RN7SKP15-201ENST00000364742 309 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 RPS3AP2-201ENST00000407190 754 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 MRPS21P2-201ENST00000424704 264 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 REG1CP-206ENST00000447469 496 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 AP006222.1-205ENST00000450734 457 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 RNU1-88P-201ENST00000459274 128 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 RPL38P3-201ENST00000484463 213 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 AC097486.1-201ENST00000515331 210 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 HMGN2P36-201ENST00000529541 409 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.69□□□□□ -1.5
SHMT2P34897 AC079600.1-201ENST00000550326 297 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.69□□□□□ -1.5
SHMT2P34897 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SHMT2P34897 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 AC100767.2-201ENST00000604840 693 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 RNA5SP439-201ENST00000617595 124 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 AP000550.3-201ENST00000637734 379 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 OR8G3P-202ENST00000641572 1255 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 AC139426.3-201ENST00000605648 2059 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 AL161756.3-201ENST00000641216 2071 ntBASIC5.69□□□□□ -1.5
SHMT2P34897 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SHMT2P34897 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.69□□□□□ -1.5
SHMT2P34897 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHMT2P34897 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.69□□□□□ -1.5
SHMT2P34897 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SHMT2P34897 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SHMT2P34897 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SHMT2P34897 RNU6-673P-201ENST00000365084 104 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 OR7E101P-201ENST00000400428 513 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 LYPLA1P3-201ENST00000402650 695 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 AC010740.1-201ENST00000417035 684 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 IPPKP1-201ENST00000422501 768 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.68□□□□□ -1.5
SHMT2P34897 BX276092.6-201ENST00000430476 250 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.68□□□□□ -1.5
SHMT2P34897 AL512637.1-201ENST00000439523 1231 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 SERPINA7P1-201ENST00000443077 631 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.68□□□□□ -1.5
SHMT2P34897 BX276092.8-201ENST00000455722 250 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 AC079080.1-201ENST00000479841 822 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 TRBV5-2-201ENST00000489095 273 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.68□□□□□ -1.5
SHMT2P34897 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.68□□□□□ -1.5
SHMT2P34897 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.68□□□□□ -1.5
SHMT2P34897 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.68□□□□□ -1.5
SHMT2P34897 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.68□□□□□ -1.5
SHMT2P34897 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.68□□□□□ -1.5
SHMT2P34897 AC091078.2-201ENST00000557145 559 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.68□□□□□ -1.5
SHMT2P34897 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.68□□□□□ -1.5
SHMT2P34897 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.68□□□□□ -1.5
SHMT2P34897 MIR4260-201ENST00000583107 67 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 AC125494.2-201ENST00000602431 657 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 SNX18P12-201ENST00000624821 759 ntBASIC5.68□□□□□ -1.5
SHMT2P34897 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.68□□□□□ -1.5
SHMT2P34897 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHMT2P34897 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms