Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 LINC00310-204ENST00000430922 2086 ntTSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 ABHD3-205ENST00000578270 2080 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 DET1-202ENST00000444300 2154 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 AL008638.2-201ENST00000453934 2383 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 TLR1-202ENST00000502213 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 PUM1-203ENST00000373742 3515 ntTSL 2 BASIC6.89□□□□□ -1.31
COL8A1P27658 SCYL2-211ENST00000635101 3948 ntTSL 5 BASIC6.89□□□□□ -1.31
COL8A1P27658 PITRM1-AS1-201ENST00000430356 3998 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL8A1P27658 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 AC138409.1-201ENST00000505001 3598 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RBM5-201ENST00000347869 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 ZNF680-201ENST00000309683 3022 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 GDNF-AS1-203ENST00000514532 2913 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 SLAMF7-203ENST00000368043 2689 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 RPE-216ENST00000454822 2130 ntTSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 CYP2C8-211ENST00000539050 2024 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 SCOC-AS1-201ENST00000512692 1987 ntTSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 EPB41L5-202ENST00000331393 1777 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 HSD11B1-203ENST00000367028 1461 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 RNU6-1309P-201ENST00000363305 108 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RN7SKP269-201ENST00000365545 319 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 RNU6-483P-201ENST00000384088 108 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AC007066.1-201ENST00000392902 381 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AL354719.1-201ENST00000406535 843 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RPL5P18-201ENST00000406671 891 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RN7SKP240-201ENST00000410583 375 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RNU4-55P-201ENST00000410731 137 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RNU2-62P-201ENST00000410868 191 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 USP9YP13-201ENST00000417797 480 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 SETP9-201ENST00000423837 832 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC6.88□□□□□ -1.31
COL8A1P27658 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 DDX11L10-201ENST00000430178 571 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AL022324.2-201ENST00000434827 780 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AC236972.2-201ENST00000434979 310 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 AL138930.1-201ENST00000446952 635 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC006480.1-201ENST00000449887 378 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RPL23AP35-201ENST00000451906 501 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC013429.1-201ENST00000456604 422 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AL928654.1-201ENST00000476081 354 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 TRBV8-1-201ENST00000481590 279 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RPS3AP14-201ENST00000483907 780 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RN7SL267P-201ENST00000485107 261 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 RPL10P7-201ENST00000495649 625 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 HMGB1P29-201ENST00000505659 499 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AC098799.3-201ENST00000506095 438 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 HSD17B11-203ENST00000507286 851 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 MTND6P2-201ENST00000512226 524 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 RN7SKP116-201ENST00000516902 319 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 COX6CP5-201ENST00000527162 228 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AP000662.1-201ENST00000530952 487 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 ACER3-213ENST00000533873 929 ntTSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.88□□□□□ -1.31
COL8A1P27658 CYP2C60P-201ENST00000566088 139 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AC010761.2-202ENST00000582536 391 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC068631.1-229ENST00000599314 739 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC243960.4-201ENST00000600532 288 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 C5orf56-207ENST00000621237 486 ntAPPRIS P5 TSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC005355.2-201ENST00000625064 484 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 SLC8A1-AS1-228ENST00000627210 225 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 SPRR5-201ENST00000636302 817 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 AF001550.2-201ENST00000636643 217 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.88□□□□□ -1.31
COL8A1P27658 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 CYFIP2-210ENST00000522463 3477 ntTSL 2 BASIC6.88□□□□□ -1.31
COL8A1P27658 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL8A1P27658 AL133279.3-201ENST00000563140 2352 ntBASIC6.88□□□□□ -1.31
COL8A1P27658 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC6.88□□□□□ -1.31
COL8A1P27658 AC011453.1-201ENST00000597619 2239 ntBASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms