Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
HOXD4P09016 DNM1P47-203ENST00000571780 12667 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC012254.3-201ENST00000591183 2117 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXD4P09016 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 AL591135.1-201ENST00000401578 5914 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXD4P09016 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HOXD4P09016 RNFT1P3-201ENST00000340898 1052 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 AL096829.1-201ENST00000413677 457 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 SDHDP6-201ENST00000414693 480 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.45□□□□□ -1.54
HOXD4P09016 MARK2P12-201ENST00000420129 585 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 AL390879.1-201ENST00000439143 386 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXD4P09016 AL445665.1-202ENST00000452436 324 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXD4P09016 AL355032.1-201ENST00000472981 438 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 RN7SL717P-201ENST00000478343 297 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 NPM1P27-201ENST00000502784 830 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 RNU6-964P-201ENST00000516524 69 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXD4P09016 TMEM97P2-201ENST00000517841 403 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC027308.1-201ENST00000517993 110 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC021733.2-201ENST00000518830 497 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXD4P09016 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXD4P09016 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HOXD4P09016 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC092121.1-201ENST00000569452 202 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC020978.7-201ENST00000575953 1187 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXD4P09016 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.45□□□□□ -1.54
HOXD4P09016 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXD4P09016 COX6CP7-201ENST00000597056 208 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 LAPTM4BP2-201ENST00000604542 446 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 AC141002.1-201ENST00000607025 279 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 FAM72A-208ENST00000607379 1139 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC022106.1-201ENST00000612834 766 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC024255.1-201ENST00000614376 102 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AL445649.1-201ENST00000615941 691 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC116667.2-201ENST00000641075 823 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXD4P09016 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXD4P09016 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXD4P09016 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXD4P09016 MTCO1P46-201ENST00000451639 1491 ntBASIC5.45□□□□□ -1.54
HOXD4P09016 AC097063.1-201ENST00000426714 1797 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXD4P09016 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
HOXD4P09016 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXD4P09016 HSPA8P14-201ENST00000552265 1805 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 CR788268.1-201ENST00000603931 1809 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
HOXD4P09016 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
HOXD4P09016 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXD4P09016 RNA5SP242-201ENST00000364171 118 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 RN7SKP292-201ENST00000365522 317 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXD4P09016 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXD4P09016 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXD4P09016 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXD4P09016 RPS15AP30-201ENST00000420976 390 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXD4P09016 AL512605.1-202ENST00000441919 381 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AC009237.1-201ENST00000442127 744 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXD4P09016 AL359955.2-201ENST00000445380 353 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 HMGN1P36-201ENST00000446623 298 ntBASIC5.44□□□□□ -1.54
HOXD4P09016 AL445466.1-201ENST00000448432 357 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms