Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 NQO1-205ENST00000561500 891 ntTSL 3 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC090241.1-201ENST00000587732 621 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC103591.3-201ENST00000608684 209 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC025588.4-201ENST00000615802 908 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC005277.2-201ENST00000617898 390 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AL354718.1-201ENST00000619764 589 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AL121985.3-201ENST00000620690 523 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 AC069542.2-201ENST00000624816 216 ntBASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.19
CCDC39Q9UFE4 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC119674.1-213ENST00000641177 1386 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 SNORA70.3-201ENST00000365075 132 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RNA5SP474-201ENST00000391234 90 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RPL5P19-201ENST00000404228 893 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL358178.1-201ENST00000407698 397 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RNA5SP115-201ENST00000411160 107 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL663109.1-201ENST00000411498 844 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RPLP1P10-201ENST00000413972 339 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RAB9AP4-201ENST00000415230 609 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 NPM1P25-201ENST00000429734 854 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 MTCYBP29-201ENST00000436327 1006 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 NPM1P9-201ENST00000453156 844 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC074087.1-201ENST00000512059 724 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 CARSP2-201ENST00000520688 277 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 IGLV3-6-201ENST00000523937 250 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AP003461.1-201ENST00000528866 78 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AP004247.1-201ENST00000531556 1289 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 CYB5AP5-201ENST00000549779 389 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC234778.2-201ENST00000566241 354 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RN7SL270P-201ENST00000579643 281 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 MIR3159-201ENST00000584572 74 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 RPS27AP19-201ENST00000597285 458 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL022067.1-201ENST00000602426 454 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL590032.1-201ENST00000604920 252 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL135786.2-201ENST00000608422 615 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC013468.1-201ENST00000608680 598 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC124016.2-201ENST00000610058 665 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL360219.1-201ENST00000610230 366 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL359513.1-201ENST00000614364 557 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 MRPL57P3-201ENST00000619218 176 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AP003072.4-201ENST00000624580 310 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 SNORA16A-202ENST00000628458 135 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 AC009135.2-201ENST00000624136 1768 ntBASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
CCDC39Q9UFE4 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 RACGAP1P-201ENST00000550663 1879 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 EEF1A1P12-201ENST00000443590 1346 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 RNU1-55P-201ENST00000365510 158 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 RNU6-298P-201ENST00000390888 96 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 snosnR66.1-201ENST00000391095 99 ntBASIC7.6□□□□□ -1.19
CCDC39Q9UFE4 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms