Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 EEF1A1P39-201ENST00000440791 250 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 UBQLN1P1-207ENST00000441056 1169 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 KATNBL1P3-201ENST00000443475 909 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 RN7SL83P-201ENST00000468131 297 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AL390198.2-201ENST00000510553 222 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC106800.2-201ENST00000514009 1103 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 IGHV3-63-201ENST00000518422 341 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 DUX4L52-201ENST00000549363 777 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 HNRNPA1P74-201ENST00000560782 835 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC091304.4-201ENST00000565703 620 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 NDUFA5P11-201ENST00000567995 343 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC036176.3-201ENST00000602456 418 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC091133.5-201ENST00000603088 301 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC107952.2-201ENST00000606048 486 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AL121890.3-201ENST00000618494 516 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 AC073569.3-201ENST00000619055 682 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 UGP2-231ENST00000627474 264 ntTSL 5 BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
TRIM39Q9HCM9 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 AC119674.1-204ENST00000641348 1343 ntBASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 CYP2G2P-201ENST00000594920 1485 ntBASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 ZNF402P-201ENST00000404435 3100 ntBASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 AC110597.1-201ENST00000562669 3176 ntBASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 ASNSP6-201ENST00000592770 1618 ntBASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.65□□□□□ -1.35
TRIM39Q9HCM9 AL022323.4-201ENST00000623980 13120 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC010894.1-201ENST00000313760 361 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RPL24P4-201ENST00000326586 421 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RN7SKP278-201ENST00000410504 342 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RNA5SP155-201ENST00000411154 129 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RPS7P12-201ENST00000422385 582 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC245452.2-201ENST00000435222 392 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC112492.1-201ENST00000449607 712 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RPL26P30-201ENST00000453533 435 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RPS6P2-201ENST00000454208 705 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 RN7SL502P-201ENST00000481857 290 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC074386.1-206ENST00000487102 761 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC117395.1-201ENST00000487390 403 ntBASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.64□□□□□ -1.35
TRIM39Q9HCM9 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms