Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC063977.5-201ENST00000601044 974 ntBASIC5.71□□□□□ -1.5
HOXC4P09017 AL691477.1-201ENST00000624398 162 ntBASIC5.71□□□□□ -1.5
HOXC4P09017 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXC4P09017 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXC4P09017 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC4P09017 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXC4P09017 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC4P09017 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC4P09017 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC4P09017 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXC4P09017 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC4P09017 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXC4P09017 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXC4P09017 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
HOXC4P09017 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
HOXC4P09017 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
HOXC4P09017 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 AC140479.2-201ENST00000421567 3130 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HOXC4P09017 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
HOXC4P09017 AL357752.1-201ENST00000412817 349 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.7□□□□□ -1.5
HOXC4P09017 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXC4P09017 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HOXC4P09017 AL662874.1-201ENST00000426065 230 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 AC009963.4-201ENST00000448535 339 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXC4P09017 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXC4P09017 RPSAP39-201ENST00000467439 883 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 TRBV5-2-201ENST00000489095 273 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXC4P09017 AC011411.1-201ENST00000509592 876 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.7□□□□□ -1.5
HOXC4P09017 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXC4P09017 AC139365.2-201ENST00000517972 253 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 AC005224.3-201ENST00000584683 2140 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXC4P09017 FO393422.1-201ENST00000603908 708 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 NANOGP3-201ENST00000605855 286 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXC4P09017 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
HOXC4P09017 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HOXC4P09017 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
HOXC4P09017 AL161912.4-201ENST00000623889 2468 ntBASIC5.7□□□□□ -1.5
HOXC4P09017 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXC4P09017 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
HOXC4P09017 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC4P09017 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
HOXC4P09017 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXC4P09017 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXC4P09017 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 RNA5SP242-201ENST00000364171 118 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AL391422.1-201ENST00000402155 436 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AL596448.1-201ENST00000415024 392 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AC113412.1-201ENST00000425840 504 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXC4P09017 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC4P09017 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXC4P09017 AC006539.1-201ENST00000481419 501 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC4P09017 AC073610.1-201ENST00000489971 396 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC4P09017 TOMM22P4-201ENST00000511318 336 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 NRBF2P4-201ENST00000520874 850 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXC4P09017 MRPS16P1-201ENST00000523462 412 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AP001804.1-201ENST00000526868 919 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AC027544.3-201ENST00000535082 757 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AC090424.1-201ENST00000535243 736 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXC4P09017 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.69□□□□□ -1.5
HOXC4P09017 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC4P09017 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXC4P09017 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC4P09017 SNORD95-201ENST00000579879 68 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC4P09017 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXC4P09017 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXC4P09017 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.69□□□□□ -1.5
HOXC4P09017 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC4P09017 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC4P09017 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXC4P09017 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXC4P09017 AC027279.4-201ENST00000624371 2072 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms