Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
DKK3Q9UBP4 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
DKK3Q9UBP4 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 CASC19-261ENST00000641853 1638 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC068769.1-201ENST00000474767 2426 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 LINC01616-201ENST00000561816 2280 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 STAG3L4-201ENST00000352103 530 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 SNORA63.3-201ENST00000362682 132 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 RNA5SP333-201ENST00000363466 118 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 RNA5SP334-201ENST00000364825 118 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 PTGES3P2-201ENST00000407942 482 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 VN1R37P-201ENST00000419096 748 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 RPSAP65-201ENST00000429660 595 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 IGLV3-4-201ENST00000432300 244 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL606490.8-201ENST00000441624 319 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 MORF4-201ENST00000447135 971 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 OR52Y1P-201ENST00000452418 828 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 RN7SL254P-201ENST00000460609 284 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC095052.1-201ENST00000509955 863 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 HMGN1P17-201ENST00000513734 295 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC011853.1-201ENST00000518911 454 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC022826.1-201ENST00000519383 805 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC073916.1-201ENST00000545095 130 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL121579.2-201ENST00000555466 590 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC027176.2-201ENST00000559166 746 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC090286.3-201ENST00000573133 187 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC233702.7-202ENST00000582941 211 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC084036.1-201ENST00000609190 508 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AP000943.4-201ENST00000622912 357 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL357140.4-201ENST00000636827 412 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AL445984.1-201ENST00000637834 659 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AC119674.1-220ENST00000641502 1048 ntBASIC6.36□□□□□ -1.39
DKK3Q9UBP4 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
DKK3Q9UBP4 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 BIN2P1-201ENST00000504996 1530 ntBASIC6.35□□□□□ -1.39
DKK3Q9UBP4 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 MTCO1P4-201ENST00000520516 1409 ntBASIC6.35□□□□□ -1.39
DKK3Q9UBP4 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 RNU4-39P-201ENST00000362455 127 ntBASIC6.35□□□□□ -1.39
DKK3Q9UBP4 RNU11-201ENST00000387069 134 ntBASIC6.35□□□□□ -1.39
DKK3Q9UBP4 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
DKK3Q9UBP4 PEX12P1-201ENST00000400284 1048 ntBASIC6.35□□□□□ -1.39
DKK3Q9UBP4 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms