Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 Y_RNA.126-201ENST00000363382 111 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RN7SL604P-201ENST00000492589 296 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 MIR2117-201ENST00000516780 80 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 OR5AZ1P-201ENST00000527448 943 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 AC004836.1-201ENST00000623032 634 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC100871.1-201ENST00000507871 1456 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 RNA5SP91-201ENST00000390902 119 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 RN7SKP151-201ENST00000410230 316 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AL133325.1-201ENST00000421090 382 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC092647.3-201ENST00000443044 633 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC105399.1-202ENST00000447303 205 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC096741.1-201ENST00000472250 846 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC008897.1-201ENST00000494006 347 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AL023583.1-201ENST00000607518 1143 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC068831.8-201ENST00000620171 435 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AP001885.1-201ENST00000621658 558 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC012618.3-205ENST00000637896 1496 ntBASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC7.26□□□□□ -1.25
SHANK3Q9BYB0 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AP003170.5-201ENST00000397185 335 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AL161747.1-201ENST00000480068 358 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 RPS17P5-201ENST00000498293 408 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 RNU6ATAC24P-201ENST00000516811 135 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AC024940.3-201ENST00000538551 316 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 BNIP3P22-201ENST00000593399 556 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 SAMMSON-209ENST00000641222 1100 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 HSPA8P18-201ENST00000439846 1928 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 ZNF101P1-201ENST00000435701 1720 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 EPS15P1-202ENST00000459691 2071 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 CAST-222ENST00000508579 1758 ntTSL 2 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 AL662795.2-201ENST00000624252 3706 ntBASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
SHANK3Q9BYB0 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SHANK3Q9BYB0 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms