Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 OR13C1P-202ENST00000641378 2919 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 OR10R3P-201ENST00000361688 942 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 MIR375-201ENST00000362103 64 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 SNORA70H-201ENST00000383910 135 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 SNORA70J-201ENST00000384182 135 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 RANP7-201ENST00000418085 644 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AL121776.1-201ENST00000429337 372 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 LDHAP2-201ENST00000437325 985 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 NPM1P19-201ENST00000450070 712 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 RPS27AP2-201ENST00000457576 465 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 RNU6-751P-201ENST00000516382 101 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AC110056.1-201ENST00000525759 911 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AC090022.1-201ENST00000546569 311 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AC091078.2-201ENST00000557145 559 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AC234775.3-201ENST00000564612 656 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AL137246.2-201ENST00000613439 662 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 AL049634.1-201ENST00000453770 1720 ntBASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC3Q9BQI4 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AL137058.3-201ENST00000624531 3099 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 NCOA4P2-201ENST00000340589 1813 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 RN7SKP128-201ENST00000364270 303 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 OR7E101P-201ENST00000400428 513 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 ZNF736P10Y-201ENST00000403990 1110 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 RN7SKP293-201ENST00000411389 296 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 HMGA1P8-201ENST00000414130 321 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 MARK2P12-201ENST00000420129 585 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 BX119904.3-201ENST00000428194 957 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC126120.1-201ENST00000431082 470 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 SUMO2P3-201ENST00000438311 288 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AP000281.1-201ENST00000444036 316 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AL022319.1-201ENST00000458183 1167 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC110749.1-201ENST00000462007 357 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 CYCSP22-201ENST00000517555 339 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 OR6M2P-201ENST00000529831 871 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC006530.1-201ENST00000555980 571 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AL356801.1-201ENST00000559320 294 ntBASIC5.81□□□□□ -1.48
CCDC3Q9BQI4 AC007494.1-201ENST00000562293 760 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms