Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC02495-203ENST00000636704 242 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC132825.7-201ENST00000638744 335 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
USP39Q53GS9 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 PCF11-AS1-201ENST00000602322 1516 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AL591848.4-201ENST00000567832 3472 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
USP39Q53GS9 CR383656.5-201ENST00000547616 1340 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC007114.2-201ENST00000576014 4281 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
USP39Q53GS9 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
USP39Q53GS9 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 SNORA11B-201ENST00000408175 129 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 RNU6-564P-201ENST00000410983 104 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 HMGN1P20-201ENST00000411849 300 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 IPPKP1-201ENST00000422501 768 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 IGLV3-4-201ENST00000432300 244 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 RSU1P1-201ENST00000453416 441 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 SETP20-201ENST00000457046 852 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 COX6B1P4-201ENST00000519826 484 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AL049874.4-201ENST00000557593 255 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC234775.3-201ENST00000564612 656 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC061975.8-201ENST00000587058 721 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 AC119751.7-201ENST00000600494 245 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AC013562.2-201ENST00000611632 603 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 AL445647.2-201ENST00000615170 130 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 AC018926.1-201ENST00000616335 435 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 AC005277.2-201ENST00000617898 390 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
USP39Q53GS9 HSPD1P9-201ENST00000420325 1636 ntBASIC6.54□□□□□ -1.36
USP39Q53GS9 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.54□□□□□ -1.36
USP39Q53GS9 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.54□□□□□ -1.36
USP39Q53GS9 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
USP39Q53GS9 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.53□□□□□ -1.36
USP39Q53GS9 CDY5P-201ENST00000411487 1580 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 CDY9P-201ENST00000451397 1580 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC008957.3-201ENST00000624112 2242 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC093225.1-201ENST00000506867 1408 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
USP39Q53GS9 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 RNU6-609P-201ENST00000365459 107 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 TRAV35-201ENST00000390462 330 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 CASP3-203ENST00000393588 677 ntTSL 4 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AP002530.1-201ENST00000405705 684 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 AL049697.3-201ENST00000406493 982 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 AC096537.2-201ENST00000413707 714 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 MTCO3P30-201ENST00000426425 670 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms