Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC9.38□□□□□ -0.91
CUX1P39880 RNU1-88P-201ENST00000459274 128 ntBASIC9.38□□□□□ -0.91
CUX1P39880 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
CUX1P39880 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 IGHVIII-76-1-201ENST00000523776 286 ntBASIC9.38□□□□□ -0.91
CUX1P39880 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC9.38□□□□□ -0.91
CUX1P39880 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC9.38□□□□□ -0.91
CUX1P39880 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC9.38□□□□□ -0.91
CUX1P39880 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
CUX1P39880 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
CUX1P39880 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
CUX1P39880 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 OR55B1P-203ENST00000641518 2602 ntBASIC9.37□□□□□ -0.91
CUX1P39880 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC9.37□□□□□ -0.91
CUX1P39880 SNORA67-201ENST00000384423 137 ntBASIC9.37□□□□□ -0.91
CUX1P39880 RNA5SP91-201ENST00000390902 119 ntBASIC9.37□□□□□ -0.91
CUX1P39880 AC116036.1-201ENST00000412199 367 ntBASIC9.37□□□□□ -0.91
CUX1P39880 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 CEACAMP7-201ENST00000444105 496 ntBASIC9.37□□□□□ -0.91
CUX1P39880 AC109462.1-201ENST00000491087 368 ntBASIC9.37□□□□□ -0.91
CUX1P39880 AC105233.1-201ENST00000498840 781 ntBASIC9.37□□□□□ -0.91
CUX1P39880 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC9.37□□□□□ -0.91
CUX1P39880 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC9.37□□□□□ -0.91
CUX1P39880 AC067852.5-201ENST00000589299 310 ntBASIC9.37□□□□□ -0.91
CUX1P39880 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC9.37□□□□□ -0.91
CUX1P39880 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC9.37□□□□□ -0.91
CUX1P39880 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
CUX1P39880 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
CUX1P39880 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 NAV2-203ENST00000396085 11000 ntAPPRIS P4 TSL 5 BASIC9.37□□□□□ -0.91
CUX1P39880 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC9.37□□□□□ -0.91
CUX1P39880 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
CUX1P39880 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
CUX1P39880 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC9.36□□□□□ -0.91
CUX1P39880 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
CUX1P39880 AL360271.1-201ENST00000395679 510 ntBASIC9.36□□□□□ -0.91
CUX1P39880 RN7SKP279-201ENST00000411383 298 ntBASIC9.36□□□□□ -0.91
CUX1P39880 HNRNPA3P4-201ENST00000427514 803 ntBASIC9.36□□□□□ -0.91
CUX1P39880 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC9.36□□□□□ -0.91
CUX1P39880 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX1P39880 CT45A11P-201ENST00000448043 1134 ntBASIC9.36□□□□□ -0.91
CUX1P39880 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX1P39880 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX1P39880 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC9.36□□□□□ -0.91
CUX1P39880 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX1P39880 CDC42EP3P1-201ENST00000601004 764 ntBASIC9.36□□□□□ -0.91
CUX1P39880 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX1P39880 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX1P39880 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC9.36□□□□□ -0.91
CUX1P39880 AP000550.3-201ENST00000637734 379 ntBASIC9.36□□□□□ -0.91
CUX1P39880 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 PABPC1P8-201ENST00000452851 2086 ntBASIC9.36□□□□□ -0.91
CUX1P39880 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC9.36□□□□□ -0.91
CUX1P39880 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC9.36□□□□□ -0.91
CUX1P39880 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC9.36□□□□□ -0.91
CUX1P39880 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
CUX1P39880 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 RNU4-4P-201ENST00000364588 130 ntBASIC9.36□□□□□ -0.91
CUX1P39880 RNU1-43P-201ENST00000365052 165 ntBASIC9.36□□□□□ -0.91
CUX1P39880 AC008171.1-201ENST00000395058 200 ntBASIC9.36□□□□□ -0.91
CUX1P39880 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 RPL26P29-201ENST00000415623 438 ntBASIC9.36□□□□□ -0.91
CUX1P39880 PPP2R2DP1-201ENST00000420526 637 ntBASIC9.36□□□□□ -0.91
CUX1P39880 ELOCP3-201ENST00000439303 348 ntBASIC9.36□□□□□ -0.91
CUX1P39880 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC9.36□□□□□ -0.91
CUX1P39880 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC9.36□□□□□ -0.91
CUX1P39880 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 AC083982.1-201ENST00000485679 344 ntBASIC9.36□□□□□ -0.91
CUX1P39880 TOMM22P4-201ENST00000511318 336 ntBASIC9.36□□□□□ -0.91
CUX1P39880 AC137768.1-201ENST00000549998 553 ntBASIC9.36□□□□□ -0.91
CUX1P39880 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC9.36□□□□□ -0.91
CUX1P39880 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC9.36□□□□□ -0.91
CUX1P39880 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC9.36□□□□□ -0.91
CUX1P39880 AC009163.6-201ENST00000612367 342 ntBASIC9.36□□□□□ -0.91
CUX1P39880 WBP1LP8-201ENST00000617401 327 ntBASIC9.36□□□□□ -0.91
CUX1P39880 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
CUX1P39880 AL162456.1-201ENST00000634535 2006 ntBASIC9.35□□□□□ -0.91
CUX1P39880 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
CUX1P39880 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC9.35□□□□□ -0.91
CUX1P39880 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms