Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC068305.2-201ENST00000550567 1205 ntBASIC5.74□□□□□ -1.49
SHMT2P34897 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.74□□□□□ -1.49
SHMT2P34897 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.74□□□□□ -1.49
SHMT2P34897 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.74□□□□□ -1.49
SHMT2P34897 HMGN2P47-201ENST00000559378 272 ntBASIC5.74□□□□□ -1.49
SHMT2P34897 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.74□□□□□ -1.49
SHMT2P34897 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.74□□□□□ -1.49
SHMT2P34897 AC145423.1-201ENST00000605712 336 ntBASIC5.74□□□□□ -1.49
SHMT2P34897 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.74□□□□□ -1.49
SHMT2P34897 SAMM50P1-201ENST00000455403 1399 ntBASIC5.74□□□□□ -1.49
SHMT2P34897 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHMT2P34897 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHMT2P34897 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.74□□□□□ -1.49
SHMT2P34897 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.74□□□□□ -1.49
SHMT2P34897 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SHMT2P34897 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SHMT2P34897 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SHMT2P34897 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.73□□□□□ -1.49
SHMT2P34897 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 PDZK1P1-202ENST00000425209 1350 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 U3.10-201ENST00000364459 214 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 MIR1203-201ENST00000408812 85 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 AL354890.1-201ENST00000413730 346 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 SETP9-201ENST00000423837 832 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.73□□□□□ -1.49
SHMT2P34897 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.73□□□□□ -1.49
SHMT2P34897 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.73□□□□□ -1.49
SHMT2P34897 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.73□□□□□ -1.49
SHMT2P34897 PFN1P6-201ENST00000476786 399 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 RN7SL57P-201ENST00000493687 290 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.73□□□□□ -1.49
SHMT2P34897 RN7SKP288-201ENST00000516227 268 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.73□□□□□ -1.49
SHMT2P34897 AP000648.1-201ENST00000529682 397 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.73□□□□□ -1.49
SHMT2P34897 AL356801.1-201ENST00000559320 294 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.73□□□□□ -1.49
SHMT2P34897 AC092121.1-201ENST00000569452 202 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 TXNP4-201ENST00000575018 310 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.73□□□□□ -1.49
SHMT2P34897 COX6CP7-201ENST00000597056 208 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 AL031601.1-201ENST00000605702 394 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.73□□□□□ -1.49
SHMT2P34897 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.73□□□□□ -1.49
SHMT2P34897 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SHMT2P34897 AP002512.4-202ENST00000641599 4530 ntBASIC5.73□□□□□ -1.49
SHMT2P34897 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
SHMT2P34897 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
SHMT2P34897 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.72□□□□□ -1.49
SHMT2P34897 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SHMT2P34897 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 AL355488.2-201ENST00000609909 2850 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SHMT2P34897 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.72□□□□□ -1.49
SHMT2P34897 TMSB4XP2-201ENST00000335179 210 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 SNORD1C-201ENST00000363315 78 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
SHMT2P34897 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 CDY8P-201ENST00000428380 1279 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 RPL5P2-201ENST00000429598 854 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 AC079807.1-201ENST00000429993 481 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 AC126120.1-201ENST00000431082 470 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 AC073410.1-201ENST00000435125 589 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 PCBP2P1-201ENST00000437262 977 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.72□□□□□ -1.49
SHMT2P34897 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.72□□□□□ -1.49
SHMT2P34897 CDY20P-201ENST00000447528 1279 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 AC006499.4-201ENST00000510947 694 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 AC114781.3-201ENST00000512083 142 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.72□□□□□ -1.49
SHMT2P34897 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SHMT2P34897 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.72□□□□□ -1.49
SHMT2P34897 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 ZNF322P1-201ENST00000568013 1209 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 GARSP1-201ENST00000570895 719 ntBASIC5.72□□□□□ -1.49
SHMT2P34897 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
SHMT2P34897 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SHMT2P34897 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms