Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC012254.3-201ENST00000591183 2117 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 BNIP3P27-201ENST00000599991 412 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 AC108865.2-201ENST00000606881 432 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 AC108673.3-201ENST00000609183 335 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 AC096708.4-201ENST00000620563 552 ntBASIC6.99□□□□□ -1.29
SMARCA1P28370 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC6.99□□□□□ -1.29
SMARCA1P28370 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
SMARCA1P28370 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.99□□□□□ -1.29
SMARCA1P28370 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.99□□□□□ -1.29
SMARCA1P28370 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SMARCA1P28370 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.98□□□□□ -1.29
SMARCA1P28370 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
SMARCA1P28370 RNFT1P3-201ENST00000340898 1052 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 AC096644.3-201ENST00000416788 338 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 GAPDHP34-201ENST00000432112 823 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC104849.1-201ENST00000462623 405 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 RN7SL269P-201ENST00000467795 305 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC128716.1-201ENST00000475129 166 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 CCDC11P1-201ENST00000503137 1162 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 AC025458.1-201ENST00000506046 166 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC027369.2-201ENST00000528030 440 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 AC079905.1-201ENST00000549280 475 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 DNAJC19P3-201ENST00000594491 331 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.98□□□□□ -1.29
SMARCA1P28370 AC079315.1-201ENST00000602952 623 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 AC242628.1-201ENST00000606810 391 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 AC025262.3-201ENST00000623666 360 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 MIR1910-201ENST00000636955 80 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 TTC41P-205ENST00000551270 3963 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.98□□□□□ -1.29
SMARCA1P28370 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.98□□□□□ -1.29
SMARCA1P28370 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.98□□□□□ -1.29
SMARCA1P28370 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC6.98□□□□□ -1.29
SMARCA1P28370 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
SMARCA1P28370 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 AL136520.1-201ENST00000600311 1322 ntBASIC6.98□□□□□ -1.29
SMARCA1P28370 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
SMARCA1P28370 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.97□□□□□ -1.29
SMARCA1P28370 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
SMARCA1P28370 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.97□□□□□ -1.29
SMARCA1P28370 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMARCA1P28370 AL592494.2-201ENST00000425455 1548 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 ICE2P1-201ENST00000512800 1849 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.97□□□□□ -1.29
SMARCA1P28370 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SMARCA1P28370 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SMARCA1P28370 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMARCA1P28370 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.97□□□□□ -1.29
SMARCA1P28370 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
SMARCA1P28370 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC6.97□□□□□ -1.29
SMARCA1P28370 AL451046.1-201ENST00000406097 534 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.97□□□□□ -1.29
SMARCA1P28370 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.97□□□□□ -1.29
SMARCA1P28370 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.97□□□□□ -1.29
SMARCA1P28370 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.97□□□□□ -1.29
SMARCA1P28370 TUBB4BP6-201ENST00000437576 479 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 SDC4P-201ENST00000453285 601 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 AC018635.1-201ENST00000468292 1030 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.97□□□□□ -1.29
SMARCA1P28370 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.97□□□□□ -1.29
SMARCA1P28370 HMGN1P15-201ENST00000513870 295 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 RNA5SP340-201ENST00000517132 107 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.97□□□□□ -1.29
SMARCA1P28370 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.97□□□□□ -1.29
SMARCA1P28370 TRIM77BP-201ENST00000524985 1119 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 MTND5P21-201ENST00000531961 522 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 NPM1P5-201ENST00000557228 838 ntBASIC6.97□□□□□ -1.29
SMARCA1P28370 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC6.97□□□□□ -1.29
SMARCA1P28370 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.97□□□□□ -1.29
SMARCA1P28370 MIR6793-201ENST00000612376 63 ntBASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms