Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC012616.1-201ENST00000600294 197 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AC087783.2-201ENST00000605070 562 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
COL5A1P20908 CC2D2A-204ENST00000503292 5175 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL5A1P20908 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC5.53□□□□□ -1.52
COL5A1P20908 AC104581.5-201ENST00000624171 7141 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL5A1P20908 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL5A1P20908 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.53□□□□□ -1.52
COL5A1P20908 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL5A1P20908 MIR130A-201ENST00000385274 89 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 SLC35E1P1-201ENST00000419313 864 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AK3P5-201ENST00000432033 519 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.53□□□□□ -1.52
COL5A1P20908 AC073410.1-201ENST00000435125 589 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.53□□□□□ -1.52
COL5A1P20908 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.53□□□□□ -1.52
COL5A1P20908 ACA64.4-201ENST00000459070 127 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 RPL7AP6-201ENST00000477943 801 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AC093267.1-201ENST00000489176 961 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.53□□□□□ -1.52
COL5A1P20908 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.53□□□□□ -1.52
COL5A1P20908 OR51K1P-201ENST00000510214 950 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.53□□□□□ -1.52
COL5A1P20908 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.53□□□□□ -1.52
COL5A1P20908 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.53□□□□□ -1.52
COL5A1P20908 AC008115.3-201ENST00000614874 549 ntBASIC5.53□□□□□ -1.52
COL5A1P20908 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.53□□□□□ -1.52
COL5A1P20908 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL5A1P20908 AC016251.2-201ENST00000623393 3089 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A1P20908 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A1P20908 AC130304.1-201ENST00000622942 2385 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
COL5A1P20908 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL5A1P20908 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 AC005294.1-201ENST00000355509 281 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 U8.4-201ENST00000363626 134 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL5A1P20908 RNA5SP339-201ENST00000390987 122 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.52□□□□□ -1.53
COL5A1P20908 RPL23AP27-201ENST00000415161 451 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 AC108075.1-201ENST00000424692 529 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 AC096775.1-201ENST00000437724 448 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 RNU1-88P-201ENST00000459274 128 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.52□□□□□ -1.53
COL5A1P20908 RN7SL352P-201ENST00000466002 277 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 RPL7P39-201ENST00000481157 744 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 RPS4XP1-201ENST00000482189 787 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.52□□□□□ -1.53
COL5A1P20908 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.52□□□□□ -1.53
COL5A1P20908 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A1P20908 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A1P20908 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.52□□□□□ -1.53
COL5A1P20908 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.52□□□□□ -1.53
COL5A1P20908 AC126915.2-201ENST00000610957 190 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 MIR378J-201ENST00000611988 109 ntBASIC5.52□□□□□ -1.53
COL5A1P20908 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
COL5A1P20908 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL5A1P20908 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.52□□□□□ -1.53
COL5A1P20908 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
COL5A1P20908 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
COL5A1P20908 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC5.51□□□□□ -1.53
COL5A1P20908 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A1P20908 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.51□□□□□ -1.53
COL5A1P20908 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.51□□□□□ -1.53
COL5A1P20908 NENFP1-201ENST00000419476 466 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A1P20908 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.51□□□□□ -1.53
COL5A1P20908 DNAJB5P1-201ENST00000454004 806 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AP000547.1-201ENST00000454360 617 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms