Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SHOX2O60902 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SHOX2O60902 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SHOX2O60902 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SHOX2O60902 OR4F13P-202ENST00000560066 2054 ntBASIC5.79□□□□□ -1.48
SHOX2O60902 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.79□□□□□ -1.48
SHOX2O60902 AC104964.3-201ENST00000606115 2860 ntBASIC5.79□□□□□ -1.48
SHOX2O60902 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SHOX2O60902 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
SHOX2O60902 AC007996.1-201ENST00000620414 2821 ntBASIC5.79□□□□□ -1.48
SHOX2O60902 AL121839.2-201ENST00000565058 6943 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC092634.1-201ENST00000366505 199 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 AL096829.1-201ENST00000413677 457 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.78□□□□□ -1.48
SHOX2O60902 DHFRP2-201ENST00000414224 547 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC5.78□□□□□ -1.48
SHOX2O60902 RPL21P50-201ENST00000417698 477 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.78□□□□□ -1.48
SHOX2O60902 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 RPL34P6-201ENST00000432390 345 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AC000374.1-201ENST00000434698 1745 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC090804.1-201ENST00000448870 490 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 HIGD1AP16-201ENST00000450986 258 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.78□□□□□ -1.48
SHOX2O60902 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
SHOX2O60902 RN7SL350P-201ENST00000492591 299 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AC093816.1-201ENST00000515076 913 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 RNA5SP418-201ENST00000515951 117 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 AC092709.1-201ENST00000521355 1045 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AP006245.2-201ENST00000522004 300 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC016383.1-201ENST00000582700 714 ntTSL 3 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.78□□□□□ -1.48
SHOX2O60902 RPL7AP69-201ENST00000595306 806 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
SHOX2O60902 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 MFSD8-219ENST00000641228 2559 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 AL359715.3-201ENST00000569267 2123 ntBASIC5.78□□□□□ -1.48
SHOX2O60902 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
SHOX2O60902 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
SHOX2O60902 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SHOX2O60902 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 AL078621.3-201ENST00000623707 2042 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SHOX2O60902 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
SHOX2O60902 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SHOX2O60902 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SHOX2O60902 AP001642.1-201ENST00000624727 2117 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SHOX2O60902 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SHOX2O60902 RNU1-5P-201ENST00000362684 144 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 RNA5SP326-201ENST00000363209 110 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 AC007618.1-201ENST00000366455 732 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SHOX2O60902 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SHOX2O60902 AC019178.1-201ENST00000392337 440 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 AC005042.1-201ENST00000393397 800 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC002127.1-201ENST00000421305 225 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC234771.2-201ENST00000445718 597 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC245028.2-201ENST00000458673 253 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 RN7SL168P-201ENST00000463821 279 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 OR56A7P-201ENST00000524865 941 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 OR9G2P-201ENST00000533326 880 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.77□□□□□ -1.49
SHOX2O60902 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SHOX2O60902 AC122688.1-201ENST00000541494 223 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 AC139697.1-201ENST00000548429 745 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 PRPF19P1-201ENST00000584766 898 ntBASIC5.77□□□□□ -1.49
SHOX2O60902 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC5.77□□□□□ -1.49
SHOX2O60902 AC024884.1-201ENST00000620583 399 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms