Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL049844.2-201ENST00000604280 628 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC139493.1-201ENST00000604368 397 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC010333.3-201ENST00000615100 402 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC131009.3-201ENST00000621809 287 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 MTND5P31-201ENST00000419366 1374 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RNGTT-203ENST00000538899 1374 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC005034.3-201ENST00000604845 1747 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AP000547.3-204ENST00000588548 2523 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 RNU1-55P-201ENST00000365510 158 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 MIR1266-201ENST00000408125 84 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 RN7SKP205-201ENST00000410999 307 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC023128.2-201ENST00000420880 1223 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL513175.2-201ENST00000422071 443 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC021876.1-201ENST00000425959 359 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL592437.1-201ENST00000443781 492 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 CEACAMP5-201ENST00000448037 961 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC093166.3-201ENST00000448785 303 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 RPS7P11-201ENST00000484240 586 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 MTND6P8-201ENST00000503471 522 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC135279.1-201ENST00000543493 504 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC125611.1-201ENST00000549563 229 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 OR4C49P-201ENST00000563891 900 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 ANP32BP1-202ENST00000568553 737 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 RBM22P1-201ENST00000578589 1214 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 RN7SL270P-201ENST00000579643 281 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC134669.1-201ENST00000581275 672 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL035411.2-201ENST00000604022 421 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 HNRNPA3P9-201ENST00000604913 979 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL138693.1-201ENST00000622219 129 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC005514.1-201ENST00000623521 208 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC120057.5-201ENST00000623840 154 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC061999.1-201ENST00000624454 177 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AL390318.1-201ENST00000624564 687 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AP001153.1-201ENST00000641024 338 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 SSXP3-201ENST00000442971 1300 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 AC096992.2-201ENST00000609553 1684 ntBASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 NRP1-205ENST00000374823 3737 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
TRIM39Q9HCM9 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 165.8 ms