Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SNORA11C-201ENST00000408532 129 ntBASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 RNU1-88P-201ENST00000459274 128 ntBASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 AC087385.3-201ENST00000620477 187 ntBASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 TEX41-254ENST00000626394 423 ntTSL 5 BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC7.3□□□□□ -1.24
SHANK3Q9BYB0 AC006511.3-201ENST00000624929 1783 ntBASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 SAMM50P1-201ENST00000455403 1399 ntBASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 RAD17P2-201ENST00000451754 1977 ntBASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 RNA5SP326-201ENST00000363209 110 ntBASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AL445687.2-201ENST00000458156 728 ntBASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AC090114.3-201ENST00000479267 829 ntBASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AC063949.1-201ENST00000552900 865 ntBASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AC010245.2-201ENST00000606908 1167 ntBASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.29□□□□□ -1.24
SHANK3Q9BYB0 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AL049745.1-201ENST00000433953 286 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 CT45A11P-201ENST00000448043 1134 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 RPL7P45-201ENST00000455851 743 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 BNIP3P1-201ENST00000547295 580 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AC234771.5-201ENST00000600161 514 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 CDC42EP3P1-201ENST00000601004 764 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AC087283.1-201ENST00000604029 1074 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 CYCSP1-201ENST00000604815 315 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 MIR6758-201ENST00000620653 63 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 PWAR1-201ENST00000624188 2414 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 MAPK10-263ENST00000641052 4307 ntBASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SHANK3Q9BYB0 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RNU1-149P-201ENST00000390870 161 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RPSAP35-201ENST00000413753 818 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 OR5M12P-201ENST00000423388 929 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 AC091180.1-201ENST00000462104 372 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RPS3AP41-201ENST00000462701 778 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RN7SL51P-201ENST00000468230 285 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 RPL7P39-201ENST00000481157 744 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 TRBV5-2-201ENST00000489095 273 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 AC005034.3-201ENST00000604845 1747 ntBASIC7.27□□□□□ -1.25
SHANK3Q9BYB0 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms