Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL133243.2-201ENST00000610331 1621 ntBASIC7.92□□□□□ -1.14
CHMP4AQ9BY43 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
CHMP4AQ9BY43 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC7.92□□□□□ -1.14
CHMP4AQ9BY43 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC7.92□□□□□ -1.14
CHMP4AQ9BY43 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC7.92□□□□□ -1.14
CHMP4AQ9BY43 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 STX3-208ENST00000641815 3236 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL591848.4-201ENST00000567832 3472 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 RNU6-891P-201ENST00000384280 111 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 SNORA51.9-201ENST00000384295 124 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC245096.1-201ENST00000413104 546 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 ATP5A1P8-201ENST00000423669 1291 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC117394.1-201ENST00000477323 567 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 RPA2P1-201ENST00000556557 721 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 TEX41-218ENST00000596540 882 ntTSL 5 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL499605.1-201ENST00000604628 403 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC012213.4-201ENST00000606457 354 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC105105.5-201ENST00000622635 1294 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC003992.1-201ENST00000635364 557 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 AL355834.1-201ENST00000556602 3965 ntBASIC7.91□□□□□ -1.14
CHMP4AQ9BY43 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC011815.2-201ENST00000618230 2021 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 IFIT1P1-201ENST00000400497 1449 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 RNU6-819P-201ENST00000364116 107 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 RNU105B-201ENST00000364478 208 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 RNU6-1251P-201ENST00000364502 107 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AP003170.5-201ENST00000397185 335 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 RPL5P19-201ENST00000404228 893 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 GLUD1P9-201ENST00000420997 1173 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 ARL5AP3-201ENST00000439327 386 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AMYP1-201ENST00000440059 1023 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC009237.1-201ENST00000442127 744 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 CCRL1P1-201ENST00000449542 1053 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AP002884.1-201ENST00000479691 655 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 RPL7AP10-201ENST00000481016 791 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 CYP4F27P-201ENST00000514557 494 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC022826.1-201ENST00000519383 805 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC109635.6-201ENST00000525487 1113 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 OR7E10P-201ENST00000526420 991 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC021269.1-201ENST00000526860 705 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC007956.1-201ENST00000555623 542 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC134669.1-201ENST00000581275 672 ntBASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC7.9□□□□□ -1.14
CHMP4AQ9BY43 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC7.9□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms