Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CASKP1-201ENST00000412870 582 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 RPL35AP3-201ENST00000414680 288 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AL513325.1-201ENST00000417716 1034 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 UBE2V2P3-201ENST00000433562 437 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC112187.1-201ENST00000455837 479 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 RPSAP39-201ENST00000467439 883 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC124945.1-201ENST00000485133 188 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC083795.1-201ENST00000491760 320 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AL136038.1-201ENST00000497246 351 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 RN7SL284P-201ENST00000498823 275 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC020916.2-201ENST00000591242 360 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 RNA5SP440-201ENST00000612665 119 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AL021918.2-201ENST00000613415 194 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 MIR6826-201ENST00000617808 98 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AP001885.1-201ENST00000621658 558 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC018659.2-201ENST00000624690 715 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AP004289.1-201ENST00000436307 2205 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC008957.3-201ENST00000624112 2242 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC092692.1-201ENST00000623625 2595 ntBASIC5.84□□□□□ -1.47
CCDC3Q9BQI4 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
CCDC3Q9BQI4 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.48
CCDC3Q9BQI4 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 BRD7P6-201ENST00000431406 1860 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC112243.1-201ENST00000623949 3851 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 U3.25-201ENST00000391209 220 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC116036.1-201ENST00000412199 367 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 BMS1P10-201ENST00000443754 1120 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AL512593.1-201ENST00000444758 779 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 RPS27AP3-201ENST00000453803 454 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC023245.1-201ENST00000468501 517 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 RPS4XP14-201ENST00000493072 781 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 SNORA70.20-201ENST00000516848 126 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 RNU4ATAC-201ENST00000580972 127 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 NPM1P45-201ENST00000583151 559 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 FAM27E4-201ENST00000605259 342 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AL512624.1-201ENST00000613638 469 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC022467.1-201ENST00000614738 749 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 AC132825.8-201ENST00000640783 297 ntBASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC3Q9BQI4 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms