Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS35Q96QK1 WBP1LP3-201ENST00000523033 208 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 MIR4776-2-201ENST00000580204 80 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 AC067773.1-201ENST00000603284 1094 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 uc_338.26-201ENST00000612659 160 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 AL021918.2-201ENST00000613415 194 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS35Q96QK1 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.9□□□□□ -1.47
VPS35Q96QK1 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS35Q96QK1 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS35Q96QK1 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.9□□□□□ -1.47
VPS35Q96QK1 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.9□□□□□ -1.47
VPS35Q96QK1 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS35Q96QK1 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
VPS35Q96QK1 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
VPS35Q96QK1 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
VPS35Q96QK1 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS35Q96QK1 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS35Q96QK1 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
VPS35Q96QK1 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS35Q96QK1 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS35Q96QK1 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS35Q96QK1 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS35Q96QK1 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS35Q96QK1 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 BRAFP1-201ENST00000445336 2703 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS35Q96QK1 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 RN7SKP128-201ENST00000364270 303 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL096800.1-201ENST00000405326 893 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 SNORA11.5-201ENST00000408163 128 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 RANP7-201ENST00000418085 644 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 AC066692.1-201ENST00000421721 457 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 DNAJA1P5-201ENST00000440278 943 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 OR5H7P-201ENST00000514084 930 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 Y_RNA.667-201ENST00000516212 107 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 GTF2IP11-201ENST00000526931 420 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 AP000648.1-201ENST00000529682 397 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL138895.2-201ENST00000603019 178 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL031601.1-201ENST00000605702 394 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 AL445670.1-201ENST00000618889 801 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 FO681491.1-202ENST00000623392 737 ntBASIC5.89□□□□□ -1.47
VPS35Q96QK1 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS35Q96QK1 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS35Q96QK1 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
VPS35Q96QK1 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 AC130304.1-201ENST00000622942 2385 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 SNORD1C-201ENST00000363315 78 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 RPL23AP17-201ENST00000401064 499 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 AL354890.1-201ENST00000413730 346 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 RPS4XP5-201ENST00000419038 768 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 AKR1B10P1-201ENST00000425765 942 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 AC115283.1-201ENST00000427353 400 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 AL390879.1-201ENST00000439143 386 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 AC108751.3-201ENST00000461814 1020 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
VPS35Q96QK1 RNA5SP438-201ENST00000516561 112 ntBASIC5.88□□□□□ -1.47
VPS35Q96QK1 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.88□□□□□ -1.47
VPS35Q96QK1 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms