Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SKA3Q8IX90 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC120036.2-201ENST00000509729 1474 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SKA3Q8IX90 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 MIR130B-202ENST00000385018 82 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 RN7SKP166-201ENST00000410812 305 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC007679.3-201ENST00000434035 414 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 RPL12P18-201ENST00000437175 325 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 AL162739.1-201ENST00000450606 307 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 RBBP4P1-201ENST00000502424 1276 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 RNU6-964P-201ENST00000516524 69 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC008429.4-201ENST00000521201 182 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC090286.3-201ENST00000573133 187 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AP001437.1-201ENST00000608783 456 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC092266.1-201ENST00000610958 165 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 uc_338.26-201ENST00000612659 160 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 AC093225.1-201ENST00000506867 1408 ntBASIC5.28□□□□□ -1.56
SKA3Q8IX90 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SKA3Q8IX90 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.28□□□□□ -1.56
SKA3Q8IX90 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SKA3Q8IX90 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 RN7SKP187-201ENST00000365536 330 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 AL121977.1-201ENST00000401636 979 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 SNRPEP6-201ENST00000407465 277 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 BTG3P1-201ENST00000435859 716 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 AMYP1-201ENST00000440059 1023 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 SDC4P-201ENST00000453285 601 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 CTSLP6-201ENST00000458273 1002 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 ACA64.4-201ENST00000459070 127 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 ASNSP4-201ENST00000511103 447 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 AC138832.1-201ENST00000522871 556 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 AC110056.1-201ENST00000525759 911 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 AC002310.3-201ENST00000569728 723 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 AP005119.1-201ENST00000580956 292 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 IPO5-229ENST00000631030 192 ntTSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 MAPK10-338ENST00000641647 3362 ntBASIC5.27□□□□□ -1.57
SKA3Q8IX90 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SKA3Q8IX90 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.27□□□□□ -1.57
SKA3Q8IX90 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms