Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.03□□□□□ -1.28
COL5A3P25940 Z82209.2-201ENST00000623410 2012 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 AL162456.1-201ENST00000634535 2006 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
COL5A3P25940 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
COL5A3P25940 RNU1-43P-201ENST00000365052 165 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
COL5A3P25940 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 AC116036.1-201ENST00000412199 367 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC7.03□□□□□ -1.28
COL5A3P25940 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC7.03□□□□□ -1.28
COL5A3P25940 HNRNPA3P4-201ENST00000427514 803 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 RPS18P6-201ENST00000476880 458 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 AC109462.1-201ENST00000491087 368 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC7.03□□□□□ -1.28
COL5A3P25940 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC7.03□□□□□ -1.28
COL5A3P25940 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 HIGD1AP5-201ENST00000529959 259 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC7.03□□□□□ -1.28
COL5A3P25940 AC137768.1-201ENST00000549998 553 ntBASIC7.03□□□□□ -1.28
COL5A3P25940 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC7.03□□□□□ -1.28
COL5A3P25940 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC7.03□□□□□ -1.28
COL5A3P25940 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 WWOX-217ENST00000620008 450 ntTSL 2 BASIC7.03□□□□□ -1.28
COL5A3P25940 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC7.03□□□□□ -1.28
COL5A3P25940 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL5A3P25940 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC7.03□□□□□ -1.28
COL5A3P25940 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
COL5A3P25940 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC7.02□□□□□ -1.28
COL5A3P25940 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.02□□□□□ -1.28
COL5A3P25940 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.28
COL5A3P25940 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC7.02□□□□□ -1.29
COL5A3P25940 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC7.02□□□□□ -1.29
COL5A3P25940 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
COL5A3P25940 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC7.02□□□□□ -1.29
COL5A3P25940 RNU6ATAC21P-201ENST00000408656 126 ntBASIC7.02□□□□□ -1.29
COL5A3P25940 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC7.02□□□□□ -1.29
COL5A3P25940 PPP2R2DP1-201ENST00000420526 637 ntBASIC7.02□□□□□ -1.29
COL5A3P25940 AL360081.1-201ENST00000428299 555 ntBASIC7.02□□□□□ -1.29
COL5A3P25940 FABP5P2-201ENST00000439042 408 ntBASIC7.02□□□□□ -1.29
COL5A3P25940 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC7.02□□□□□ -1.29
COL5A3P25940 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC7.02□□□□□ -1.29
COL5A3P25940 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC7.02□□□□□ -1.29
COL5A3P25940 AP000550.3-201ENST00000637734 379 ntBASIC7.02□□□□□ -1.29
COL5A3P25940 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
COL5A3P25940 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC7.02□□□□□ -1.29
COL5A3P25940 OR55B1P-203ENST00000641518 2602 ntBASIC7.02□□□□□ -1.29
COL5A3P25940 AC011493.1-201ENST00000596753 1632 ntBASIC7.02□□□□□ -1.29
COL5A3P25940 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.02□□□□□ -1.29
COL5A3P25940 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC7.02□□□□□ -1.29
COL5A3P25940 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC7.02□□□□□ -1.29
COL5A3P25940 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.02□□□□□ -1.29
COL5A3P25940 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
COL5A3P25940 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL5A3P25940 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
COL5A3P25940 SNORA17.1-201ENST00000362945 126 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 RN7SKP103-201ENST00000363848 320 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.01□□□□□ -1.29
COL5A3P25940 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC7.01□□□□□ -1.29
COL5A3P25940 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.01□□□□□ -1.29
COL5A3P25940 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC7.01□□□□□ -1.29
COL5A3P25940 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC7.01□□□□□ -1.29
COL5A3P25940 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC7.01□□□□□ -1.29
COL5A3P25940 AC093890.1-201ENST00000502554 540 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC7.01□□□□□ -1.29
COL5A3P25940 HMGB1P40-201ENST00000525121 540 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC7.01□□□□□ -1.29
COL5A3P25940 DHFRP1-201ENST00000579682 559 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC7.01□□□□□ -1.29
COL5A3P25940 AC011840.5-201ENST00000582125 771 ntBASIC7.01□□□□□ -1.29
COL5A3P25940 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC7.01□□□□□ -1.29
COL5A3P25940 uc_338.18-201ENST00000615451 175 ntBASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms