Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SDC1P18827 GAPDHP48-201ENST00000436626 961 ntBASIC5.5□□□□□ -1.53
SDC1P18827 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.5□□□□□ -1.53
SDC1P18827 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.5□□□□□ -1.53
SDC1P18827 BX276092.8-201ENST00000455722 250 ntBASIC5.5□□□□□ -1.53
SDC1P18827 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.5□□□□□ -1.53
SDC1P18827 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.5□□□□□ -1.53
SDC1P18827 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.5□□□□□ -1.53
SDC1P18827 AC093815.1-201ENST00000508637 280 ntBASIC5.5□□□□□ -1.53
SDC1P18827 HSD3BP3-201ENST00000514706 994 ntBASIC5.5□□□□□ -1.53
SDC1P18827 SCARNA18.1-201ENST00000516330 83 ntBASIC5.5□□□□□ -1.53
SDC1P18827 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.5□□□□□ -1.53
SDC1P18827 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.5□□□□□ -1.53
SDC1P18827 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.5□□□□□ -1.53
SDC1P18827 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.5□□□□□ -1.53
SDC1P18827 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.5□□□□□ -1.53
SDC1P18827 AC245014.3-201ENST00000618589 347 ntBASIC5.5□□□□□ -1.53
SDC1P18827 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.5□□□□□ -1.53
SDC1P18827 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.5□□□□□ -1.53
SDC1P18827 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.5□□□□□ -1.53
SDC1P18827 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.5□□□□□ -1.53
SDC1P18827 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.5□□□□□ -1.53
SDC1P18827 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.5□□□□□ -1.53
SDC1P18827 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 AC027088.4-201ENST00000611559 1947 ntBASIC5.5□□□□□ -1.53
SDC1P18827 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.5□□□□□ -1.53
SDC1P18827 AF287957.1-201ENST00000607368 1595 ntBASIC5.5□□□□□ -1.53
SDC1P18827 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SDC1P18827 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
SDC1P18827 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.49□□□□□ -1.53
SDC1P18827 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 RNA5SP453-201ENST00000362503 119 ntBASIC5.49□□□□□ -1.53
SDC1P18827 MIR130A-201ENST00000385274 89 ntBASIC5.49□□□□□ -1.53
SDC1P18827 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SDC1P18827 PLA2G12AP2-201ENST00000424744 264 ntBASIC5.49□□□□□ -1.53
SDC1P18827 TUBB4BP6-201ENST00000437576 479 ntBASIC5.49□□□□□ -1.53
SDC1P18827 ATP5LP2-201ENST00000440646 311 ntBASIC5.49□□□□□ -1.53
SDC1P18827 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.49□□□□□ -1.53
SDC1P18827 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.49□□□□□ -1.53
SDC1P18827 MEMO1P4-201ENST00000453590 386 ntBASIC5.49□□□□□ -1.53
SDC1P18827 AC009963.3-201ENST00000458090 486 ntBASIC5.49□□□□□ -1.53
SDC1P18827 AC099521.1-201ENST00000482557 334 ntBASIC5.49□□□□□ -1.53
SDC1P18827 RPS7P6-201ENST00000485777 579 ntBASIC5.49□□□□□ -1.53
SDC1P18827 AC021006.1-201ENST00000489849 553 ntBASIC5.49□□□□□ -1.53
SDC1P18827 DUTP1-201ENST00000493631 470 ntBASIC5.49□□□□□ -1.53
SDC1P18827 LDHAP1-201ENST00000509421 992 ntBASIC5.49□□□□□ -1.53
SDC1P18827 GAPDHP62-201ENST00000515313 990 ntBASIC5.49□□□□□ -1.53
SDC1P18827 RNA5SP340-201ENST00000517132 107 ntBASIC5.49□□□□□ -1.53
SDC1P18827 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.49□□□□□ -1.53
SDC1P18827 IGLV3-30-201ENST00000524362 298 ntBASIC5.49□□□□□ -1.53
SDC1P18827 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.49□□□□□ -1.53
SDC1P18827 AP003396.4-201ENST00000527574 265 ntBASIC5.49□□□□□ -1.53
SDC1P18827 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.49□□□□□ -1.53
SDC1P18827 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.49□□□□□ -1.53
SDC1P18827 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.49□□□□□ -1.53
SDC1P18827 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.49□□□□□ -1.53
SDC1P18827 AC091167.5-201ENST00000605689 894 ntBASIC5.49□□□□□ -1.53
SDC1P18827 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.49□□□□□ -1.53
SDC1P18827 AP003072.5-201ENST00000623872 773 ntBASIC5.49□□□□□ -1.53
SDC1P18827 AC005618.4-201ENST00000625053 554 ntBASIC5.49□□□□□ -1.53
SDC1P18827 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SDC1P18827 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.49□□□□□ -1.53
SDC1P18827 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SDC1P18827 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 AC093225.1-201ENST00000506867 1408 ntBASIC5.48□□□□□ -1.53
SDC1P18827 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.48□□□□□ -1.53
SDC1P18827 AL049634.1-201ENST00000453770 1720 ntBASIC5.48□□□□□ -1.53
SDC1P18827 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SDC1P18827 AC123769.1-201ENST00000530992 3192 ntBASIC5.48□□□□□ -1.53
SDC1P18827 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.48□□□□□ -1.53
SDC1P18827 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 CASC19-238ENST00000641523 1558 ntBASIC5.48□□□□□ -1.53
SDC1P18827 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.48□□□□□ -1.53
SDC1P18827 AC104966.1-201ENST00000467010 1464 ntBASIC5.48□□□□□ -1.53
SDC1P18827 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.48□□□□□ -1.53
SDC1P18827 PPBPP2-201ENST00000513150 1362 ntBASIC5.48□□□□□ -1.53
SDC1P18827 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SDC1P18827 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SDC1P18827 RN7SKP185-201ENST00000362813 326 ntBASIC5.48□□□□□ -1.53
SDC1P18827 RNA5SP500-201ENST00000364486 119 ntBASIC5.48□□□□□ -1.53
SDC1P18827 AL357752.1-201ENST00000412817 349 ntBASIC5.48□□□□□ -1.53
SDC1P18827 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.48□□□□□ -1.53
SDC1P18827 EIF5AP4-201ENST00000441206 465 ntBASIC5.48□□□□□ -1.53
SDC1P18827 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.48□□□□□ -1.53
SDC1P18827 PPIAP27-201ENST00000453800 265 ntBASIC5.48□□□□□ -1.53
SDC1P18827 Z83838.1-202ENST00000456225 839 ntBASIC5.48□□□□□ -1.53
SDC1P18827 CST12P-201ENST00000457644 362 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms