Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC083855.1-201ENST00000440041 258 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 YWHAZP2-201ENST00000440317 728 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC015983.1-201ENST00000441577 373 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC097499.1-201ENST00000444277 208 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 WDR82P2-201ENST00000444540 928 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 NPM1P9-201ENST00000453156 844 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 RPL23AP80-201ENST00000495605 424 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC009567.2-201ENST00000502989 349 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC113191.1-201ENST00000517759 403 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 OR8I1P-201ENST00000529291 931 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC007068.2-201ENST00000543168 395 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 HMGN1P26-201ENST00000558737 303 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC018558.5-201ENST00000565840 952 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 SNORD39.2-201ENST00000579995 76 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 RPL7AP69-201ENST00000595306 806 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC012557.1-201ENST00000607115 611 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC024023.1-201ENST00000624530 922 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC027559.1-201ENST00000636288 271 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 API5P1-201ENST00000424316 1510 ntBASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 NF1-214ENST00000490416 1329 ntTSL 3 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
TRIM39Q9HCM9 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 MTND5P23-201ENST00000430812 1655 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RNA5SP65-201ENST00000363166 119 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AL672167.2-201ENST00000377164 879 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RNU6-224P-201ENST00000384055 107 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 ARSFP1-201ENST00000398758 477 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC006509.1-201ENST00000420788 634 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 FO393419.3-201ENST00000428741 282 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AL022324.2-201ENST00000434827 780 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC234771.4-201ENST00000441416 730 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 CRYGGP-201ENST00000443337 145 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC004022.1-201ENST00000447766 1066 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AL589880.1-201ENST00000448271 287 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RN7SL70P-201ENST00000478322 302 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RPL7AP23-201ENST00000482625 776 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RPL5P33-201ENST00000487833 905 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RPL5P23-201ENST00000496040 868 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC091849.1-201ENST00000509920 121 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AL035458.2-201ENST00000512005 478 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 RN7SKP196-201ENST00000516267 345 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 OSBPL9P5-201ENST00000542581 171 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AGGF1P6-201ENST00000569213 976 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 GARSP1-201ENST00000570895 719 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 VN1R78P-201ENST00000597393 564 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.68□□□□□ -1.34
TRIM39Q9HCM9 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms