Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC245291.3-201ENST00000443400 292 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 HIGD1AP16-201ENST00000450986 258 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AP002371.1-201ENST00000463604 433 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 RPL34P33-201ENST00000486062 334 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC008429.4-201ENST00000521201 182 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 TPM3P3-201ENST00000521343 354 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC090286.3-201ENST00000573133 187 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 MIR132-201ENST00000591554 101 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 BNIP3P27-201ENST00000599991 412 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AP003117.1-201ENST00000602771 554 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC008555.7-201ENST00000605008 583 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC110792.4-201ENST00000609843 298 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 RN7SL261P-201ENST00000613441 282 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC022306.3-201ENST00000619930 550 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AL162233.1-201ENST00000620014 944 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 MIR6811-201ENST00000620409 58 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 EIF3EP1-201ENST00000433978 1316 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC010266.2-201ENST00000564741 3255 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC027279.4-201ENST00000624371 2072 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 RNA5SP375-201ENST00000362975 119 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 RN7SKP81-201ENST00000365603 331 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 KIF4CP-201ENST00000422742 1279 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AL731534.1-201ENST00000434711 269 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 MTCYBP14-201ENST00000457471 715 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC106806.2-201ENST00000509365 500 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC113191.1-201ENST00000517759 403 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC005632.2-201ENST00000564271 828 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC020915.5-201ENST00000596836 964 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AL583832.1-201ENST00000603227 784 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC141002.1-201ENST00000607025 279 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC005899.6-201ENST00000620729 297 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 AC023510.2-201ENST00000622162 746 ntBASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.65□□□□□ -1.5
CLIP4Q8N3C7 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 AC011416.1-201ENST00000514947 1732 ntBASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
CLIP4Q8N3C7 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CLIP4Q8N3C7 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms