Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.91□□□□□ -1.46
HNF4AP41235 AL731534.1-201ENST00000434711 269 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 HMGB3P10-201ENST00000434734 572 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.91□□□□□ -1.46
HNF4AP41235 OR7L1P-201ENST00000456181 380 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 AC104339.1-201ENST00000465478 348 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 AC005165.2-201ENST00000466070 380 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HNF4AP41235 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 AC108103.1-201ENST00000511286 446 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.91□□□□□ -1.46
HNF4AP41235 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.91□□□□□ -1.46
HNF4AP41235 RN7SKP183-201ENST00000517169 324 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.91□□□□□ -1.46
HNF4AP41235 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 TPM3P3-201ENST00000521343 354 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC5.91□□□□□ -1.46
HNF4AP41235 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HNF4AP41235 AC084033.1-201ENST00000550830 633 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 MRPS21P8-201ENST00000569196 235 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 MIR3154-201ENST00000577829 84 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 RNU4ATAC-201ENST00000580972 127 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.91□□□□□ -1.46
HNF4AP41235 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.91□□□□□ -1.46
HNF4AP41235 RN7SL261P-201ENST00000613441 282 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 AC073488.6-201ENST00000632293 754 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HNF4AP41235 SMG1P7-201ENST00000565246 2704 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
HNF4AP41235 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HNF4AP41235 AL121768.1-201ENST00000613917 2544 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.91□□□□□ -1.46
HNF4AP41235 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HNF4AP41235 AC015689.2-201ENST00000528172 1738 ntBASIC5.91□□□□□ -1.46
HNF4AP41235 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HNF4AP41235 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HNF4AP41235 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
HNF4AP41235 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HNF4AP41235 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
HNF4AP41235 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.9□□□□□ -1.46
HNF4AP41235 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HNF4AP41235 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.9□□□□□ -1.46
HNF4AP41235 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
HNF4AP41235 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
HNF4AP41235 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
HNF4AP41235 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.9□□□□□ -1.46
HNF4AP41235 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.9□□□□□ -1.46
HNF4AP41235 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.9□□□□□ -1.46
HNF4AP41235 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.9□□□□□ -1.46
HNF4AP41235 AL096800.1-201ENST00000405326 893 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 CASKP1-201ENST00000412870 582 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 PTCD2P2-201ENST00000415579 1095 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.9□□□□□ -1.46
HNF4AP41235 RPS7P8-201ENST00000418311 581 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 AC099782.1-201ENST00000425889 474 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 CLNS1AP1-201ENST00000435954 682 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 AC010240.2-201ENST00000445363 1205 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 TIMM8BP2-201ENST00000445940 251 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HNF4AP41235 SEPT7P6-201ENST00000469999 1143 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 RPL23AP40-201ENST00000487630 390 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 AC021006.1-201ENST00000489849 553 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 RN7SL362P-201ENST00000494228 267 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 AL117692.1-201ENST00000494283 713 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.9□□□□□ -1.46
HNF4AP41235 MAST4-IT1-201ENST00000514241 658 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 RNA5SP434-201ENST00000516647 121 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
HNF4AP41235 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.9□□□□□ -1.46
HNF4AP41235 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.9□□□□□ -1.46
HNF4AP41235 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.9□□□□□ -1.46
HNF4AP41235 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC5.9□□□□□ -1.46
HNF4AP41235 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.9□□□□□ -1.46
HNF4AP41235 AP005136.2-201ENST00000583253 1049 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.9□□□□□ -1.46
HNF4AP41235 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 uc_338.31-201ENST00000615595 186 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 AL109924.4-201ENST00000623089 670 ntBASIC5.9□□□□□ -1.46
HNF4AP41235 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
HNF4AP41235 AC133552.1-201ENST00000569988 4007 ntBASIC5.9□□□□□ -1.47
HNF4AP41235 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HNF4AP41235 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HNF4AP41235 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HNF4AP41235 WDR95P-201ENST00000425638 1542 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.89□□□□□ -1.47
HNF4AP41235 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 AC016583.1-201ENST00000624221 2431 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 RLIMP2-201ENST00000427891 1563 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HNF4AP41235 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
HNF4AP41235 AC005725.1-201ENST00000577346 2607 ntBASIC5.89□□□□□ -1.47
HNF4AP41235 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
HNF4AP41235 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms